Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L16
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   8e-14
SB_24629| Best HMM Match : MORN_2 (HMM E-Value=0.21)                   32   0.53 
SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_286| Best HMM Match : M (HMM E-Value=0.39)                          30   2.8  
SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               29   6.5  
SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)                    28   8.6  

>SB_21462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 40/139 (28%), Positives = 66/139 (47%)
 Frame = +3

Query: 177 SKRQWLTIVVIGIADFCNAICVALQAPFYPKEAEKKGCTATEYXXXXXXXXXXXXXXSPI 356
           S R+ L +V +    F +    ++ +PF+P EA  KG  +                 SP+
Sbjct: 41  STRRKLILVSLCFVYFSSCASFSILSPFFPNEAAIKGADSASIGIIFGVYSLVTFLMSPL 100

Query: 357 YGAHLNRIGPKLLFNTGILTTGTCAILFGLLDRVXGHVPFITLSFVIRIVEAMGNAAFLT 536
            G  L ++GP+ +  +G+   G    LFG +  +     FI    ++RIV A+G +    
Sbjct: 101 MGIWLPKVGPRFMITSGLFLMGGAETLFGFVADMPNGSVFIVFCILLRIVSALGGSMADV 160

Query: 537 ASFAIIAKEFPNNVATMFA 593
           A FAI+A EFPN++  + A
Sbjct: 161 AIFAIVAGEFPNSIGAVTA 179


>SB_24629| Best HMM Match : MORN_2 (HMM E-Value=0.21)
          Length = 269

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 731 KQLITRGAEQRRTKHGEW*TVAA*SVQRSTQSRTNDEAQTEKRFYRRKHSSNVV 570
           KQL  +GA  R  KHGEW         +STQ  +  E + E+ F      S  +
Sbjct: 82  KQLAQKGAFNRGLKHGEWMYWRPDGTLQSTQKWSKGELKIERTFNEEGRLSTTI 135


>SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 348 SPIYGAHLNRIGPKLLFNTGILTTGTCAILFGLLDRVXGHVPFITLSFVIRIV 506
           +PI+G   +R+  K L   GIL          LLD+   H+  IT++ +I I+
Sbjct: 98  APIFGYLGDRLRRKYLMALGILVWSGTVFASTLLDQDHHHIIIITITIIIIII 150


>SB_286| Best HMM Match : M (HMM E-Value=0.39)
          Length = 414

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -1

Query: 731 KQLITRGAEQRRTKHGEW*TVAA*SVQRSTQSRTNDEAQTEKRFYRRKHSS-NVVREFLX 555
           K+  ++G  Q+RT   E    +  + Q+ T  R   +  T+K  ++R+ S  N  +  L 
Sbjct: 50  KRECSKGNAQKRTLKRER---SKGNAQKGTLKRERSKGNTQKGTHKRERSKGNAQKGMLK 106

Query: 554 YY-SKRSSQEGGVSHRLHDSYYKAERYKGN 468
              SK ++Q+G +         K ER KGN
Sbjct: 107 RERSKGNAQKGTLKGNAQKETLKRERSKGN 136


>SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 817

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/54 (20%), Positives = 26/54 (48%)
 Frame = -2

Query: 646 PPRVGPTMRPKPKNVSIDANIVATLLGNSXAIIAKEAVRKAAFPIASTILITKL 485
           P +  P + PKP    +   + +T L N   ++  ++++   +   ST+  T++
Sbjct: 299 PAKPAPPVAPKPHATHVTKQLTSTPLPNHSHVVPSDSIKGGDYKWTSTVTETRV 352


>SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)
          Length = 402

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = -1

Query: 353 GAHNEHH*LEDPEHQSIFCGRAPF-LLSLFRIKRSLQRDTNCVTKISYPDNDYRQPLSLR 177
           G +NE      PE  + FC    + ++S+  +KRSL       T   Y  ND    L   
Sbjct: 298 GDYNEEEISAQPEPTTPFCYIPEYDVISVPCLKRSLPLAITASTSTGYDSNDMDDSLCSE 357

Query: 176 KIKTHHKLISVQ*IN 132
               H  L  +Q IN
Sbjct: 358 YSVVHSTLGGLQLIN 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,724,590
Number of Sequences: 59808
Number of extensions: 495740
Number of successful extensions: 1050
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)