Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L16
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-9|AAM69108.1|  486|Caenorhabditis elegans Hypothetical pr...   131   5e-31
U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical pr...   131   5e-31
Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.        29   4.3  
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    29   5.7  
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    28   9.9  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    28   9.9  

>U67949-9|AAM69108.1|  486|Caenorhabditis elegans Hypothetical
           protein F55A4.8b protein.
          Length = 486

 Score =  131 bits (317), Expect = 5e-31
 Identities = 70/176 (39%), Positives = 97/176 (55%)
 Frame = +3

Query: 177 SKRQWLTIVVIGIADFCNAICVALQAPFYPKEAEKKGCTATEYXXXXXXXXXXXXXXSPI 356
           S RQ L+I ++ +A+ C+ I  +  APFYP EA+ K  + T+               SP+
Sbjct: 80  SSRQLLSISMLSLANLCSTIAFSCIAPFYPAEAKLKNLSETQTGIVFGIFEFTMFIISPL 139

Query: 357 YGAHLNRIGPKLLFNTGILTTGTCAILFGLLDRVXGHVPFITLSFVIRIVEAMGNAAFLT 536
           +G ++  IG + +F  GI  TG  AILFG L+ +     F   S ++RI+EA+G+AAF+T
Sbjct: 140 FGKYIIFIGARTMFIVGIAVTGVTAILFGFLNFLPSGNTFFWFSVLVRILEAVGDAAFVT 199

Query: 537 ASFAIIAKEFPNNVATMFASIETFFGLGLIVGPTXXXXXXXXXXXSLPFAVLGSAL 704
           +SFAI AK FP NVA +   +ETF GLG   GP             LPF VLG  L
Sbjct: 200 SSFAIAAKSFPKNVAFVVGILETFAGLGYTAGPVIGGFFYDIGGFQLPFLVLGIVL 255


>U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical
           protein F55A4.8a protein.
          Length = 626

 Score =  131 bits (317), Expect = 5e-31
 Identities = 70/176 (39%), Positives = 97/176 (55%)
 Frame = +3

Query: 177 SKRQWLTIVVIGIADFCNAICVALQAPFYPKEAEKKGCTATEYXXXXXXXXXXXXXXSPI 356
           S RQ L+I ++ +A+ C+ I  +  APFYP EA+ K  + T+               SP+
Sbjct: 220 SSRQLLSISMLSLANLCSTIAFSCIAPFYPAEAKLKNLSETQTGIVFGIFEFTMFIISPL 279

Query: 357 YGAHLNRIGPKLLFNTGILTTGTCAILFGLLDRVXGHVPFITLSFVIRIVEAMGNAAFLT 536
           +G ++  IG + +F  GI  TG  AILFG L+ +     F   S ++RI+EA+G+AAF+T
Sbjct: 280 FGKYIIFIGARTMFIVGIAVTGVTAILFGFLNFLPSGNTFFWFSVLVRILEAVGDAAFVT 339

Query: 537 ASFAIIAKEFPNNVATMFASIETFFGLGLIVGPTXXXXXXXXXXXSLPFAVLGSAL 704
           +SFAI AK FP NVA +   +ETF GLG   GP             LPF VLG  L
Sbjct: 340 SSFAIAAKSFPKNVAFVVGILETFAGLGYTAGPVIGGFFYDIGGFQLPFLVLGIVL 395


>Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical
           protein T23G11.3 protein.
          Length = 463

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 496 ITKLSVIKGTWPXTRSSKPNNI-AHVPVVNMPVLNSSFGPILLRWAP*MGL 347
           + +L++I GT+   +S  P  +   VP+++   L SS GP+L+   P  GL
Sbjct: 317 LMELAIINGTYRPMKSPNPARVMTAVPLLSPTPLRSS-GPVLMSPTPGSGL 366


>U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.
          Length = 463

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 496 ITKLSVIKGTWPXTRSSKPNNI-AHVPVVNMPVLNSSFGPILLRWAP*MGL 347
           + +L++I GT+   +S  P  +   VP+++   L SS GP+L+   P  GL
Sbjct: 317 LMELAIINGTYRPMKSPNPARVMTAVPLLSPTPLRSS-GPVLMSPTPGSGL 366


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 700 RCSAPRVMS--CFPLPAYHDDEDLXPXRALXYSRCLP 804
           RC + R +S  CFP+P   +D    P   L + R LP
Sbjct: 763 RCDSGRFVSPSCFPIPVPVNDVHFEPFSCLSFVRSLP 799


>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
            molecule protein1, isoform c protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 169  KPIISLYQSNK*INVHY*SKFTSPAIFTISRTHFPTSNG---HKSNLKEFPIVS 17
            +P   L +  +    HY S+ ++P+I+  SR ++P  +G   H  N +   +V+
Sbjct: 923  QPFAKLLEETERRYAHYNSRASNPSIYQSSRYYYPERHGQPQHTDNTRAESVVA 976


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
            molecule protein1, isoform a protein.
          Length = 1480

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 169  KPIISLYQSNK*INVHY*SKFTSPAIFTISRTHFPTSNG---HKSNLKEFPIVS 17
            +P   L +  +    HY S+ ++P+I+  SR ++P  +G   H  N +   +V+
Sbjct: 923  QPFAKLLEETERRYAHYNSRASNPSIYQSSRYYYPERHGQPQHTDNTRAESVVA 976


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,121,843
Number of Sequences: 27780
Number of extensions: 362943
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)