Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L15
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   189   2e-48
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           189   2e-48
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.8  
At1g10490.1 68414.m01181 expressed protein contains Pfam profile...    29   4.1  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  189 bits (461), Expect = 2e-48
 Identities = 90/146 (61%), Positives = 116/146 (79%)
 Frame = +2

Query: 224 RGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDK 403
           +GTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVLC F GMD TTDK
Sbjct: 52  QGTKIASEGLKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDK 109

Query: 404 LRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMC 583
           LR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TCYAQ +Q+R IR+KM 
Sbjct: 110 LRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMR 169

Query: 584 EIITRDVTNSELREVVNKLIPDSIAQ 661
           +I+ R+ ++ +L+++V K IP++I +
Sbjct: 170 DIMVREASSCDLKDLVAKFIPEAIGR 195



 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +1

Query: 130 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNE 234
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQG +
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTK 55


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  189 bits (460), Expect = 2e-48
 Identities = 91/146 (62%), Positives = 116/146 (79%)
 Frame = +2

Query: 224 RGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDK 403
           +GTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVL  F GMD TTDK
Sbjct: 52  QGTKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDK 109

Query: 404 LRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMC 583
           LR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++TCYAQ +Q+R IR+KM 
Sbjct: 110 LRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMS 169

Query: 584 EIITRDVTNSELREVVNKLIPDSIAQ 661
           EI+ ++ ++ +L+E+V K IP++I +
Sbjct: 170 EIMVKEASSCDLKELVAKFIPEAIGR 195



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +1

Query: 130 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNE 234
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQG +
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTK 55


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -1

Query: 592 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 428
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At1g10490.1 68414.m01181 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1028

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 266 KLFPSILPKQFSFPWVRLTSVVPTCLLLNIDGALTSYQSLR 144
           KL  S+L  + +FP V LT   P   L  +DG L+ Y   R
Sbjct: 789 KLAMSVLNPKINFPEVDLTGNSPDGFLKKLDGVLSPYDMER 829


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,914,280
Number of Sequences: 28952
Number of extensions: 400634
Number of successful extensions: 1100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)