Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L14
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...   105   6e-24
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.057
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.50 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.66 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.7  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   4.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.1  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score =  105 bits (253), Expect = 6e-24
 Identities = 56/120 (46%), Positives = 73/120 (60%)
 Frame = +1

Query: 121 VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 300
           +K  ELR +                 +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 301 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 480
             ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   KT K+I+K+  FP R YA+KA
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect(2) = 0.057
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = +2

Query: 683 PPPPXKXXRXQXTXFSXGPXXGAGXPXXXPPPXQPPPXPXX--SQPXPGXXLFSPPPP 850
           PPPP +  R +       P  G G      PP  PPP      S P P     +PPPP
Sbjct: 314 PPPPSRRNRGK-------PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/78 (26%), Positives = 21/78 (26%)
 Frame = +2

Query: 614 PPXGGGXXXPPPSXNTXLGXXXXPPPPXKXXRXQXTXFSXGPXXGAGXPXXXPPPXQPPP 793
           PP        PP  N        PPPP    R         P  G   P   PPP   P 
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPP--PPRSNAAGSIPLPPQGRSAP-PPPPPRSAPS 371

Query: 794 XPXXSQPXPGXXLFSPPP 847
                 P       S PP
Sbjct: 372 TGRQPPPLSSSRAVSNPP 389



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
 Frame = +2

Query: 641 PPPSXNTXLGXXXXPPPPXKXXRXQXTXFSXGPXXGAGXPXXXPPPXQPPPXPXXSQP-- 814
           PPP  ++        PPP    R        G       P    PP  PP  P    P  
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435

Query: 815 XPGXXLFSPPPP 850
            P   + +P  P
Sbjct: 436 PPSLPMGAPAAP 447



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 517 PXPPXTPXXPPPXXPPXPXPXXP 585
           P PP  P   PP  PP   P  P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLP 440



 Score = 20.6 bits (41), Expect(2) = 0.057
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 641 PPPSXNTXLGXXXXPPPP 694
           PPPS  T       PP P
Sbjct: 257 PPPSNGTVSSPPNSPPRP 274


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 762 LXSRPPXNXPPXPXXPNPXXGXXFFPPPPP 851
           + S PP N PP P  P P       PPPPP
Sbjct: 1   MASLPPGNPPPPP--PPPGFEPPSQPPPPP 28



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 749 AGXPXXXPPPXQPPP-XPXXSQPXPGXXLFSPPPP 850
           A  P   PPP  PPP     SQP P      PPPP
Sbjct: 2   ASLPPGNPPPPPPPPGFEPPSQPPP------PPPP 30



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 517 PXPPXTPXXPPPXXPPXPXP 576
           P PP  P   PP  PP P P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 773 PPXQPPPXPXXSQPXPGXXLFSPPPPXGXXG 865
           PP  PPP P    P PG    S PPP    G
Sbjct: 5   PPGNPPPPP----PPPGFEPPSQPPPPPPPG 31



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 495 TIPKXNXXXXPXNPPXPPPXXPPXPXP 575
           ++P  N    P  P   PP  PP P P
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 770 PPPXQPPPXPXXSQPXPGXXLFSPPPPXG 856
           PP   PPP P      P      PPPP G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQP--PPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +3

Query: 759  PLXSRPPXNXPPXPXXPNPXXGXXFFPPPPPXXXXAXXXP 878
            P    PP + PP P  P    G    PPPP     A   P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 496  PSXXXTXPXPPXTPXXPPPXXPPXP 570
            P      P PP     PPP  PP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/63 (25%), Positives = 17/63 (26%)
 Frame = +2

Query: 626  GGXXXPPPSXNTXLGXXXXPPPPXKXXRXQXTXFSXGPXXGAGXPXXXPPPXQPPPXPXX 805
            GG     P     +      PP            S  P   A      PP   PPP P  
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738

Query: 806  SQP 814
            S P
Sbjct: 1739 SAP 1741


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +2

Query: 737  PXXGAGXPXXXPPPXQPPPXPXXSQPXPGXXLFSPPPP 850
            P   AG P   PPP + PP P  S   P     S  PP
Sbjct: 1182 PKPAAGVPPV-PPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +2

Query: 737  PXXGAGXPXXXPPPXQPP-PXPXXSQPXPGXXLFSPPPPXGXXGXXVXP 880
            P      P   P    PP P P  + P P   + +PP P    G    P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = +2

Query: 683 PPPPXKXXRXQXTXFSXGPXXGAGXPXXXPPPXQPPPXPXXSQPXPGXXLFSPPPP 850
           PPPP           +  P          PPP  PPP    + P P      PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP----PPPPP 783



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 614 PPXGGGXXXPPPSXNTXLGXXXXPPPP 694
           P  GG    PPP      G    PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 785 PPPXPXXSQPXPGXXLFSPPPP 850
           PPP P  S       + SPPPP
Sbjct: 908 PPPPPTASMTASAPAIASPPPP 929


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 492 IIYSSFNGIDSRW---EERFLSDLFPRLDLCF 406
           +++ +F  + + W   E  FLS +FPR   CF
Sbjct: 246 VVFGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 762 LXSRPPXNXPPXPXXPNPXXGXXFFPPPPP 851
           + S PP   PP    P       + PPPPP
Sbjct: 164 MVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,464
Number of Sequences: 5004
Number of extensions: 47054
Number of successful extensions: 310
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)