Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L14
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.92 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +2

Query: 749 AGXPXXXPPPXQPPPXP-XXSQPXPGXXLFSPPPPXGXXG 865
           +G P   P P Q P  P   S P P       PPP G  G
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPS----QGPPPGGPPG 53



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 523 PPXTPXXPPPXXPPXPXP 576
           PP     PPP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 758 PXXXPPPXQPPPXPXXSQP 814
           P   PPP  PP  P    P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 IHNVNTCDSFSYNTDLGQFRSNSTSNF 214
           IHN N  ++ +YN +   + +N+ +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNY 349


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 752 GXPXXXPPPXQPPPXPXXSQP 814
           G     P P  PPP P  S P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 334 NKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 441
           NK+  P   +    +  RK  T  +  I +RKE +K
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 43 DILXCIIYGILF 78
          D+  C+I+G+LF
Sbjct: 12 DVSSCVIFGVLF 23


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 43 DILXCIIYGILF 78
          D+  C+I+G+LF
Sbjct: 12 DVSSCVIFGVLF 23


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 446 DFFLISFLVLIFASCLVRALRIARVFLALKSK 351
           DF + S L   +  C++       +F AL+++
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,642
Number of Sequences: 438
Number of extensions: 6745
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)