Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L13
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.93 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 737 PPPPPPTXSXP 769
           PPPPPP+ S P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 493 GXXXSXPXSPPPPXPPXNXG 552
           G   + P   PPP PP + G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 343 LTFRFRYTFASFRVPDIRPVAEALWYVAWAHVVNEIVDFGILTV-RLGHLRAIQ 185
           L F   Y    F  PD  P    ++++ W   VN  ++  I T+  L + RA +
Sbjct: 341 LPFFLMYVIVPF-CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFR 393


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 343 LTFRFRYTFASFRVPDIRPVAEALWYVAWAHVVNEIVDFGILTV-RLGHLRAIQ 185
           L F   Y    F  PD  P    ++++ W   VN  ++  I T+  L + RA +
Sbjct: 341 LPFFLMYVIVPF-CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFR 393


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 343 LTFRFRYTFASFRVPDIRPVAEALWYVAWAHVVNEIVDFGILTV-RLGHLRAIQ 185
           L F   Y    F  PD  P    ++++ W   VN  ++  I T+  L + RA +
Sbjct: 341 LPFFLMYVIVPF-CPDCCPSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFR 393


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 790  QPPPPXPP 813
            QPPPP PP
Sbjct: 1354 QPPPPPPP 1361



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 520  PPPPXPPXNXG 552
            PPPP PP + G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 737  PPPPPPTXS 763
            PPPPPP  S
Sbjct: 1355 PPPPPPPPS 1363



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 737  PPPPPPTXS 763
            PPPPPP  S
Sbjct: 1356 PPPPPPPSS 1364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,696
Number of Sequences: 438
Number of extensions: 7617
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)