Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L11
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   6.0  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    26   7.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   7.9  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    26   7.9  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 404 SSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYCLGDL 258
           SS  +S ++T +     + I Y+S+NCL  + +  L   F + + +  L
Sbjct: 314 SSSRNSWIFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTFPIWFIMQTL 362


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 659 SSGNTTASRVTDDNLVVIDWRKGV 730
           SS  T A RVTD  LVV+D  +GV
Sbjct: 112 SSEVTAALRVTDGALVVVDTIEGV 135


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 398  IWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYCLGDLLDVLKHGRLED-M 222
            +W   +       G+    Y+ + CLTT+   Y S L +  Y    ++    + +LED M
Sbjct: 1787 VWRVSIRDFAEVSGATDSFYMGIMCLTTALCKYHSALLND-YRKSVIMSAWNYIKLEDPM 1845

Query: 221  VKQ 213
            VKQ
Sbjct: 1846 VKQ 1848


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 659 SSGNTTASRVTDDNLVVIDWRKGV 730
           SS  T A RVTD  LVV+D  +GV
Sbjct: 112 SSEVTAALRVTDGALVVVDTIEGV 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,091
Number of Sequences: 5004
Number of extensions: 57692
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)