Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L09
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.8  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   3.7  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   6.5  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   8.5  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 196  EAPWLRCLSSLCKLNQLASKRSFC*CSYL 110
            +AP L  LS++C  +  + KR FC  +YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 46  FFTLLSGCGNQENFNLFL-RIKVNKNINKMSAWRQAGLT 159
           F  LL+G   Q+  N +  +I + K I+ +  WRQ GLT
Sbjct: 258 FARLLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLT 296


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -1

Query: 387 IIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 211
           I++ T  +KL  D  H   L IP S    F+E   + V   CD D      + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 4   VLLPLTIGNP*DLIFFTLLSGCGNQENFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIA 183
           + L LT+ N     FF +L   GN     + +  ++   I + +A R AG T ++ S IA
Sbjct: 627 LFLNLTLLNFASFFFFMVLD-LGNSYVDKIPVGYRIMNAIFQNAATRSAGFTVVDLSQIA 685

Query: 184 AKVL 195
             V+
Sbjct: 686 PAVM 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,328
Number of Sequences: 5004
Number of extensions: 42308
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)