Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L09
         (912 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)               33   0.32 
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    29   5.2  
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   29   6.9  

>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
          Length = 440

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = -1

Query: 444 IRGRGTXXFFXXFXFFLNSIIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVG 271
           I+   +   F  F F L  +I+ T+++    D+ +  +L+IP  +W + + +  +  G
Sbjct: 317 IKNSSSELGFILFSFSLGVVIFATVIYYCEKDELNTSFLSIPDGMWYAIVTMTTTGYG 374


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 396 LNSIIYCTILHKLIVDDFHAC-WLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRL 226
           ++S+  C  +H + V     C +  + SSLW  F E+     G RC S  +FVT +RL
Sbjct: 314 MSSVRGCRYVHNVRVSLCTLCAFRYVHSSLW--FSELFGKRFGTRCRSCDKFVTERRL 369


>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 297 LEVCRSSVGPRCDSDVRFVTFQRLCSK 217
           L  C SSV PR D+D R +TF+  C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,096,980
Number of Sequences: 59808
Number of extensions: 307911
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)