Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L09
         (912 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri...    64   2e-10
At5g24100.1 68418.m02830 leucine-rich repeat transmembrane prote...    33   0.20 
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    29   4.3  
At2g44440.1 68415.m05526 emsy N terminus domain-containing prote...    29   5.7  

>At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial
           identical to ATP synthase epsilon chain, mitochondrial
           SP:Q96253 from [Arabidopsis thaliana]
          Length = 70

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 25/49 (51%), Positives = 37/49 (75%)
 Frame = +1

Query: 139 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGRP 285
           WR AG+TYI+YSNI A ++R  LK+  +AEAL R++ H  ++ WA+G+P
Sbjct: 10  WRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58


>At5g24100.1 68418.m02830 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 614

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
 Frame = -1

Query: 441 RGRGTXXFFXXFXFFLNSIIYCTILHKLIVD-----DFHACWLTIPSSLWNSFLEVCRSS 277
           RGR    +F  F FF +S +Y  +   L  D     DF    +   S  WN+   VC + 
Sbjct: 3   RGRSFIFYFVLFLFFGSSALYSQVTGDLAGDRQALLDFLNNIIHPRSLAWNTSSPVCTTW 62

Query: 276 VGPRCDSDVRFVTFQRLCSKFLL 208
            G  CD D   VT   L    LL
Sbjct: 63  PGVTCDIDGTRVTALHLPGASLL 85


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase II SP:P27046 from [Mus
           musculus]
          Length = 1173

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 CTPPESCSKVKKE*LTNMHENHQLLIY 365
           C PP SCSK+  + +T +   HQ L++
Sbjct: 743 CPPPYSCSKLDND-VTEIRNEHQTLVF 768


>At2g44440.1 68415.m05526 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 429

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +1

Query: 73  NQENFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALK--RDE 246
           N+E+  L  R+  +  I ++  WRQ+G    +  N AA+V+  +L     + ++K  +  
Sbjct: 102 NEEHRELLGRVNSDDTIRRIREWRQSGGMQPSMRN-AAQVVHDTLPSPSVSASMKTHKPN 160

Query: 247 SHVRVTPWANGRPAHLQKAVP 309
             +   P+A+  P+   +A P
Sbjct: 161 QPIPSQPFASSSPSFHPQADP 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,454
Number of Sequences: 28952
Number of extensions: 221639
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)