Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L08
         (1044 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    37   0.004
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.007
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.36 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   7.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    22   8.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +3

Query: 723 PPPPPXPXSXAXLPTPPPPXXRXSXLFXPPPPGPXGXP 836
           PPPPP P S A    P PP  R +    PPPP P   P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSA----PPPPPPRSAP 370



 Score = 31.1 bits (67), Expect = 0.27
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 726 PPPPXPXSXAXLPTPPPPXXRXSXLFXPPPPGP 824
           PPPP P S       PPP      +  PP P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 29.9 bits (64), Expect = 0.62
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 726 PPPPXPXSXAXLPTPPPPXXRXSXLFXPPPPGP 824
           PPPP P S      PP      +    PPPP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
 Frame = +3

Query: 693 GGGSXLLXXXPPPP--------PXPXSXAXLPTPPPPXXRXSXLFXPPP 815
           G  +  L   PPPP        P P      P PPPP    S    PPP
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 723 PPPPPXPXSXAXLPTPPPPXXRXSXLFXPPPPGP 824
           P PPP P      P PPPP    +    PPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 34.7 bits (76), Expect = 0.022
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +3

Query: 708 LLXXXPPPPP----XPXSXAXLPTPPPPXXRXSXLFXPPPPGPXG 830
           LL   PPPPP       + A +P PPP          PPPPG  G
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772



 Score = 31.1 bits (67), Expect = 0.27
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 708 LLXXXPPPPPXPXSXAXLPTPPPP 779
           ++   PPPPP P      P PPPP
Sbjct: 757 IMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 723  PPPPPXPXSXAXLPTPPPPXXRXSXLFXPPPPG 821
            PPPP  P   A  P+ PPP    S     P PG
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 723  PPPPPXPXSXAXLPTPPP-PXXRXSXLFXPPPPGP 824
            P PPP P S    P+ PP P    S    PPPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPS---APPPPLP 1736


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 732  PPXPXSXAXLPTPPPPXXRXSXLFXPPPPGPXGXP 836
            PP P S +  P+ PPP    S    P  P P G P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEI-PSIPAPSGAP 1083



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +3

Query: 726  PPPPXPXSXAXLPTPP---PPXXRXSXLFXPPPPGPXGXP 836
            PP P P     +P P    PP  + S +  PP P P G P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPS-VAVPPVPAPSGAP 1121


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 723 PPPPPXPXSXAXLPTPPPPXXRXSXLFXPPPPG 821
           PPPPP P      P+ PPP         PPPPG
Sbjct: 9   PPPPPPPPGFEP-PSQPPP---------PPPPG 31



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 762 PTPPPPXXRXSXLFXPPPPGPXG 830
           P PPPP         PPPP P G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 723 PPPPPXPXSXAXLPTPP 773
           PPPPP P   A  P PP
Sbjct: 6   PPPPPAPAPAAAAPAPP 22



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +3

Query: 726 PPPPXPXSXAXLPTPPPPXXRXSXLFXPPPPGPXGXP 836
           P PP P S    PT  PP  R S     PPP P   P
Sbjct: 128 PAPPTPQSELRPPTSAPP--RPSI----PPPSPASAP 158


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +3

Query: 723  PPPPPXPXSXAXLP---TPPPPXXRXSXLFXPP 812
            PPPPP     A  P   +PPPP  +    + PP
Sbjct: 908  PPPPPTASMTASAPAIASPPPP--KVGETYHPP 938


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 699  GSXLLXXXPPPPPXPXSXAXLPTPPPPXXRXSXLFXPPPPGP 824
            GS L     PPPP P +   LP   PP    +     PP GP
Sbjct: 1873 GSDLSNQAAPPPPPPMA---LPKAGPPSAAPTSAL--PPAGP 1909


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.2 bits (45), Expect(2) = 8.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 713 FXXPPPPPXP 742
           F  PPPPP P
Sbjct: 944 FPPPPPPPPP 953



 Score = 21.8 bits (44), Expect(2) = 8.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 722 PPPPPXPXL 748
           PPPPP P L
Sbjct: 946 PPPPPPPPL 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,650
Number of Sequences: 5004
Number of extensions: 25424
Number of successful extensions: 271
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)