Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L06
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    29   0.64 
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   6.0  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   7.9  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   7.9  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   7.9  

>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 290 TCEMEGATFFYPDDKFEFDAVTTYWNTSQPFEWISIGISSQMAKG--VFETVDGVSIMDV 463
           TC  EG    +        AV ++   S PF  I++   +Q A G  +  ++  V + DV
Sbjct: 72  TCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKKNQFATGSELTRSLASVQLWDV 131

Query: 464 YNKWK-PGEPNDSHNNE 511
            ++ K   + ND+HN++
Sbjct: 132 RSEQKLIRQWNDAHNDD 148


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
            Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +2

Query: 200  FFRKDYTYIESTESFYKIHTLYKKW-VDAKKTCEMEGATFFYPDDKFEFDAVTTYWNTSQ 376
            F   D   +   E   +I T +K W +  K+      + FF P+D  E +     +    
Sbjct: 840  FSDDDLKLMNEEEIMEQIET-FKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDWY 898

Query: 377  PFEWISIGISSQMAKGVFETVDGVS 451
            P      G  S + KG+ ET D +S
Sbjct: 899  PNRARDPGTLSHLVKGLKETADHLS 923


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 191 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 286
           E     KDYT  E  + F K   +YKK  D K
Sbjct: 5   EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 599 ASLEWNVNCDIPNTDYAYXXVLGRCYKMYLTPMTWSEPYR 718
           +S++W+ N  + NTDY Y  ++  C+     P+  +   R
Sbjct: 187 SSMDWSCNMTLCNTDYPY--LVNTCFNGTQYPVNCNSALR 224


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 237 RAFTKFTRYIRNGWTLRRL-AKWRGLLSFTLMTSLNSML*PLIGTRHNPSN 386
           +A+TK   +IRNG +     ++W+GL + TL  S  S +       H PSN
Sbjct: 435 KAWTK--HFIRNGESAAYAWSQWKGLYNLTLNMSYISFVMAAWKLYHLPSN 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,764
Number of Sequences: 5004
Number of extensions: 63438
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)