Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_L04
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 31 1.2
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 30 2.1
05_03_0428 + 13899295-13899669 30 2.7
03_02_0178 + 6195402-6199158,6199438-6200003 30 2.7
01_01_1004 - 7944214-7944227,7944641-7945769 29 3.6
02_04_0302 - 21829991-21830626,21831864-21832784 29 4.7
10_08_0149 + 15223441-15223568,15223697-15223751,15223936-152239... 29 6.3
09_06_0323 - 22337217-22337450,22338263-22339204 29 6.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.3
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 28 8.3
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 660 PLPLTGYPVRLSPFGKRGAFLIAHAVGISVPVXV-VRSQAGL--CAPNPPFNPNRCA 821
P+P+ + PFG G A G+ P+ V S AGL A PP P RCA
Sbjct: 614 PIPVGSWLGSFPPFGYLGPVPALSAAGLHHPMDVKPGSSAGLQHAALLPPVRPKRCA 670
>04_04_0843 -
28619064-28619280,28619730-28619825,28620349-28620720,
28620849-28621161,28621183-28621393,28621478-28621681,
28622328-28622726
Length = 603
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 629 EAPSCALLFPTPAAYRIPCP-PFSLREAW 712
EAP C L P P YR+P P P SL + W
Sbjct: 109 EAPVC--LVPPPRGYRVPVPWPESLHKIW 135
>05_03_0428 + 13899295-13899669
Length = 124
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 754 CXSFAPKLGCVHQTPRSTPTAAPLSRLXXR 843
C S AP C HQT + TAAP+ RL R
Sbjct: 93 CRSPAPVCCCRHQTRPPSVTAAPVKRLRGR 122
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +1
Query: 565 RRSSQRWRNPTGL*RYQAFPPGSSLVRSPVSDPCRLPDTLS 687
RR S WR+ GL Y+A P S SP + P RLP S
Sbjct: 113 RRQSGGWRDSEGLDGYRAAPRRSG--ASPPTPPLRLPSESS 151
>01_01_1004 - 7944214-7944227,7944641-7945769
Length = 380
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 638 SCALLFPTPAAYRIPCPP---FSLREAWRLSHSSRCRYLSSGVXR 763
+C P PA +P PP REAW + RC +S+G R
Sbjct: 211 TCDPFAPAPALRFVPLPPGKELRCREAWGVLDKYRCVRVSAGKLR 255
>02_04_0302 - 21829991-21830626,21831864-21832784
Length = 518
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +3
Query: 612 PGVSPWKLPRALSCFRPLPLTGYPVRLSPFGKRGAFLIAHAVGISVPVXVVRSQAGLCAP 791
P V W L + C R + VR + GK VG+S V++ L +P
Sbjct: 318 PTVLIWILAELMRCPRVMAKAQAEVRQAAVGKT-RITENDIVGLSYLKMVIKEALRLHSP 376
Query: 792 NPPFNPNRC 818
P NP +C
Sbjct: 377 APLLNPRKC 385
>10_08_0149 +
15223441-15223568,15223697-15223751,15223936-15223983,
15224901-15225008
Length = 112
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 615 GVSPWKLPRALSCFRPLPLTGYPVRLSPFGKRGAFLIAHAVGISVPVXVVRSQAGLC 785
G S +P+AL+ PL+ P+R + + L++ AVG+S PV + GLC
Sbjct: 19 GGSGGGIPQALADALVCPLSKKPLR---YCEDSGSLVSDAVGVSFPVVPSDTSWGLC 72
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 581 GGETRQDYKDTRRFPLEAPSCALLFPTPAAYRIPCPPFSLREAWRLSHSSRCRYLSSG 754
GGE ++ RRF AP ALL P P ++ A ++HS+RCR+ + G
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQLRAAPASPAAMAAA-AVAHSTRCRFRADG 219
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 295 NESAN---ARGEAVCVLGALPLPRSLTRCAR 378
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 515 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 655
CWR + T D Q + +KD P + PSC L+F
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIF 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,599,964
Number of Sequences: 37544
Number of extensions: 533904
Number of successful extensions: 1698
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1698
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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