Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L02
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.11 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   5.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.5  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    26   7.3  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   7.3  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 379 SPPGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGC 200
           +PP P +L P A P +  +S        P+ P  PS+  P  PK  PPP+  + V +   
Sbjct: 164 APPIPSSLPPPAQPAAPVKSP-------PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSS 216

Query: 199 R 197
           R
Sbjct: 217 R 217


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 286 PKSPS-SFCPKVPKTLPPPICLSQVTS 209
           P SP  SF  +VP  +PPP+C   V S
Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVS 191


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 490 VCGIWIRXPTFLPVVWSRRSSVTKDQTSD 576
           + G+ IR   F P V S +S + KDQ+S+
Sbjct: 635 MAGLDIRKEPFTPAVPSAKSGLKKDQSSE 663


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 684  RSYLSNYIMEQT*TYLATDYCIGVEVITNHGGSLLGVRRLVFCDRT 547
            RS L+ +  EQ    L + Y +  +   NH  ++LG R  +F + T
Sbjct: 997  RSILAEF--EQLTPPLHSPYSVNAKAADNHPVAILGAREYIFSENT 1040


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 613  NTYTIICCQICLSLFHN 663
            NT TIICC+  + L HN
Sbjct: 1056 NTTTIICCEPVIGLGHN 1072


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 331 LPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCRLEGCPLIE 173
           +P++  ++SL   A  + PSS  P    ++P     S VTS    L   PL E
Sbjct: 1   MPKAKKRVSLASKASSRLPSSGKPSQQASIPNVELSSTVTSNSQVLNNDPLKE 53


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 526 AEKWVXLSRSHTPEPDAVIPDLPPICLFRSIVACAFLF 413
           AEKWV L+    P  D V+  +   C    +    F F
Sbjct: 357 AEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCF 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,722
Number of Sequences: 5004
Number of extensions: 68331
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)