Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L02
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         39   0.004
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    30   1.9  
05_07_0351 + 29468247-29469851                                         29   4.4  
10_08_0226 - 16001958-16002527                                         29   5.8  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 28/56 (50%), Positives = 35/56 (62%)
 Frame = -1

Query: 388  LVLSPPGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLS 221
            ++LSPP  K+L P A PVSLP   +K SL  P  P +P S  P V K+LPPP  +S
Sbjct: 1254 VILSPPAVKSLPPPA-PVSLPPPPVK-SL--P--PPAPVSLPPPVVKSLPPPAPVS 1303


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
 Frame = -1

Query: 538 TIPPAEKWVXL-SRSHTP-----EPDAVIPDLPPICLFRSIVACAFLFAQSRRPS*LVLS 377
           ++PPAE  V   S  H P     +P A  P  PP  L  +I   A     S  P      
Sbjct: 194 SLPPAEPPVPSPSPEHPPRHSPSKPPAYAPAKPPTALRPAIPPAAMPKPPSVAPVQPPQR 253

Query: 376 PPGPKTLVP*A*PVSL----------PRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPIC 227
           PP P T  P + P  L          P  +       PA P + ++  PK   + PPP C
Sbjct: 254 PPAPATKPPPSFPPQLAPTMPPPAHAPAETPAPPTTPPALPPATTAPSPKNSSSSPPPPC 313


>05_07_0351 + 29468247-29469851
          Length = 534

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 276 GLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYDGRLDWANKNAQATIDLNRQI 455
           G++G+      + +    KL G   G      GG   ++DG L   N  +   I   R+ 
Sbjct: 235 GIYGQEKATVAVSDGTMKKLPGLVIGCSTFEHGGAVNSHDGILSLGNSPSSFGIAAARRF 294

Query: 456 GGR 464
           GGR
Sbjct: 295 GGR 297


>10_08_0226 - 16001958-16002527
          Length = 189

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
 Frame = +3

Query: 234 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQA-YGTRVLGPGGDSTNYDGRLDW 410
           G G   G++ Q   G     G    +     G + G   YGT   G G  S   DG    
Sbjct: 91  GQGSSSGSVSQGG-GSASAGGGGGGVAGGQAGGVDGSGGYGTGT-GSGTGSAAADGGASP 148

Query: 411 ANK----NAQATIDLNRQIGGRSGMTASGSG 491
            +     NA AT D N   GG+SG + SG G
Sbjct: 149 TSSPPYANANATGDGNGNGGGQSGGSGSGGG 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,369,157
Number of Sequences: 37544
Number of extensions: 518401
Number of successful extensions: 1465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)