Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_L02
(811 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5) 31 1.5
SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15) 30 2.6
SB_47127| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_32567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 28 7.8
SB_40892| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1297
Score = 31.1 bits (67), Expect = 1.1
Identities = 32/109 (29%), Positives = 41/109 (37%)
Frame = +3
Query: 228 QMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYDGRLD 407
Q G G FGT GLFG AG N G +TG +G ST + G
Sbjct: 48 QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFGS 104
Query: 408 WANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKXTHFSAGGMVSKEFG 554
A N N G T +G+G++ + F GG + FG
Sbjct: 105 TAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGAAF--GGTSTSGFG 146
>SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)
Length = 141
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +3
Query: 357 RVLGPGGDSTNYDGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKXTHFSAGGM 536
+V G G + ++ D W KN + + + R+ M A ++D+ F G +
Sbjct: 24 KVKGLGDEESDDDSAAAWVAKNRKKEEE-KKMAEKRAQMLA------EMDE--EFGIGEL 74
Query: 537 VSKEFGHKRPDVGLQAEIRHD 599
+ +EFGHKRP +A D
Sbjct: 75 IHEEFGHKRPSSSRKAYTSRD 95
>SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)
Length = 1029
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 6 LLPPHYREFLKI*HSRLEERNLIQLKMNSNLFYIFATTLVCV 131
+LPP + L + H+R+ ER + + FYIF ++ +
Sbjct: 554 ILPPDQAKLLTMRHARMRERKMYAVLRELGFFYIFLCLVLMI 595
>SB_47127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 133 MQKFTDLLITQKIIRSGGSPQGDTLVTSLGTNKW 234
M+ FTD LI+ I+ S GD LV +W
Sbjct: 1 MKHFTDTLISANIVESNSCSPGDPLVLERPPPRW 34
>SB_32567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 133 MQKFTDLLITQKIIRSGGSPQGDTLVTSLGTNKW 234
M+ FTD LI+ II S GD LV +W
Sbjct: 1 MKHFTDTLISANIISSNSCSPGDPLVLERPPPRW 34
>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 360 VLGPGGDSTN-YDGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKXTHFSAGG 533
VL GD T+ YDGR W + + D ++ + ASG GV ++++ +FS G
Sbjct: 681 VLDSWGDPTDDYDGRPQWFDAFCGVSDDYDQTVFESVVNAASGGGVGEMEE--YFSGPG 737
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/93 (25%), Positives = 36/93 (38%)
Frame = +3
Query: 144 YGPFDYAEDYSIRGQPSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDD 323
+ P A+ + R R H +D G ++ G NDD FG +G + FNDD
Sbjct: 289 HAPSQPADQPTNRSLDCRAHRQDTP------GHGLYSNDGNNDDAHFGDSG-RHDNFNDD 341
Query: 324 RGKLTGQAYGTRVLGPGGDSTNYDGRLDWANKN 422
G G + NY+ ++ N N
Sbjct: 342 ISN-DGNLNGGGANNNNNKNNNYNSGINNNNNN 373
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +3
Query: 303 REIFNDDRGKLTGQAYGT---RVLG-PGGDSTNYDGRLDWANKNAQATI 437
R ++ND +L G + R + PG T Y R+D KN+Q TI
Sbjct: 633 RTLYNDSDSRLGGMSTSLAEFRTINLPGSSVTKYMERIDEIRKNSQRTI 681
>SB_40892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +3
Query: 237 GGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYDG 398
G G G +DDG G +DD G G +Y G GGD +YDG
Sbjct: 163 GDDAAGGGGSDDDGYDAAGGGG----SDDDGDDGGGSYDDGDDGGGGDDDDYDG 212
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,985,101
Number of Sequences: 59808
Number of extensions: 580062
Number of successful extensions: 1256
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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