Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K22
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 313 QSKGRDKGNPWGRGGSR 363
           +  GR KG   G+GGSR
Sbjct: 76  EETGRGKGRGHGKGGSR 92



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 313 QSKGRDKGNPWGRGGSR 363
           + +G  KG   GRGG+R
Sbjct: 82  KGRGHGKGGSRGRGGNR 98


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 641 CNGPWRGQFCLRSQESL 591
           C  PW  ++CL   E L
Sbjct: 139 CGNPWNTRYCLTPTERL 155


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 641 CNGPWRGQFCLRSQESL 591
           C  PW  ++CL   E L
Sbjct: 192 CGNPWNTRYCLTPTERL 208


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 131 VPHTNVTNNSSLSMTGCAATDT 66
           +P+T V N++ +++TG  A  T
Sbjct: 366 IPNTEVFNDTKITITGLNAVTT 387


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -3

Query: 425 SRISXRILRNADLIIRMCVMTLEPPLPQGFPLSLPLDCAPAPRLVPRKAAASRREGDAIT 246
           SRIS RI RN  L+   C+ +           SL        +L+ R+    R+E   IT
Sbjct: 34  SRISNRISRNRVLLRGQCISSRRNGRHNVH--SLAFGAIQLRQLLKRQLCEKRKEVSIIT 91

Query: 245 FLSSAR 228
             SS +
Sbjct: 92  EDSSRK 97


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 259 PSRRDAAAFLGTSLGAGAQSKGRDKG 336
           P+R   A FLG +LG  A +K   +G
Sbjct: 71  PARGLTAVFLGLNLGFLAWAKHNPRG 96


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 807 CTPILRFQCKTKDCKRRIVGFLMVVFSSTVEIFFFCF 697
           C+P  R   K+  CK  ++    V FS    +  F +
Sbjct: 53  CSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIY 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,779
Number of Sequences: 438
Number of extensions: 4936
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)