Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K21
         (867 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   30   2.1  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   29   3.7  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_51778| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.31)            28   8.6  
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_20561| Best HMM Match : 7tm_1 (HMM E-Value=0.2)                     28   8.6  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 141 HIKSKNVDAVFVEKQKKILSFFQDVSQLNTDD-EYYKIGKD---YDIEM 275
           +I  + ++A  +EK K++L FF  +   N +D EY  I  +   Y +EM
Sbjct: 226 YILKEEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -2

Query: 611 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFK 432
           VN +Q F    + ++   +SR+   + +R  DN D EG+ E T     T   G L + F 
Sbjct: 658 VNDIQDFAFSNNMKLNPAKSRHQAFIPLRCKDNGDREGMFEAT-----TTPGGVLCKNFW 712

Query: 431 VLSV 420
           V +V
Sbjct: 713 VKAV 716


>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 264 HSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHPHFLTLCARFWY 127
           H LC +  + ++ L   +L  +  +  A Q   H H+ T CA  W+
Sbjct: 329 HKLCYYVALQYRSLC-HYLLHKLCYCVALQYCSHCHYYTSCATVWH 373


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +3

Query: 303 AVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQ 482
           A++E   MY+TG + +   F   + K+ D     F +F      E  Y+S C   VHL++
Sbjct: 372 ALKELWSMYQTGELKRR--FQEAFAKISDGQEIKFSVFID----ENEYRSICLNLVHLSR 425

Query: 483 GQFL 494
            +F+
Sbjct: 426 AEFV 429


>SB_51778| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.31)
          Length = 239

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 697 CKRSSRFPL*MPYLAAASGLMRPCCIFV 614
           CKR S  P  M YL A  G+    CIF+
Sbjct: 27  CKRWSSVPSPMMYLIAVQGIFSVICIFL 54


>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 234 HQCLVGSHLGRRTEFSFAFQQIRHPHFLTLCAR 136
           + CL  SH+  +    F  +Q R  H  T+C R
Sbjct: 417 YNCLSSSHISSKCTSKFRCRQCRGKHHTTICER 449


>SB_20561| Best HMM Match : 7tm_1 (HMM E-Value=0.2)
          Length = 310

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 697 CKRSSRFPL*MPYLAAASGLMRPCCIFV 614
           CKR S  P  M YL A  G+    CIF+
Sbjct: 27  CKRWSSVPSPMMYLIAVQGIFSVICIFL 54


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 282 PYSFRYHSLCQF-YNIHHQCLVGSHLGRRTEFSFAFQQIRHP 160
           P+S+R    C+F   +H+ CL  +H  +  EF +   +   P
Sbjct: 68  PFSYRNKVFCRFDAAVHYDCLYVTHKKKHVEFRWLHIEFLQP 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,191,542
Number of Sequences: 59808
Number of extensions: 482976
Number of successful extensions: 1079
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)