Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_K21
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 34 0.15
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 34 0.15
L25599-2|AAK84536.1| 419|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF016683-4|AAB66195.1| 410|Caenorhabditis elegans Hypothetical ... 31 1.1
Z99281-13|CAB16522.1| 236|Caenorhabditis elegans Hypothetical p... 30 1.9
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 2.5
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 2.5
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 30 2.5
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 30 2.5
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 30 2.5
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 29 3.3
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 4.3
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 4.3
AF016681-4|AAB66174.2| 276|Caenorhabditis elegans Hypothetical ... 29 4.3
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 29 5.7
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 29 5.7
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 29 5.7
AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p4... 28 9.9
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 33.9 bits (74), Expect = 0.15
Identities = 30/100 (30%), Positives = 48/100 (48%)
Frame = +3
Query: 132 KTEHIKSKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 311
+TE K VD K KK+ S F + +T D YY + + + + + +TN V+
Sbjct: 38 ETEEEAQKYVDD---RKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVK 86
Query: 312 EFLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKD 431
E +K Y P + ++S +EAIA FH +Y K+
Sbjct: 87 EHIKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 33.9 bits (74), Expect = 0.15
Identities = 30/100 (30%), Positives = 48/100 (48%)
Frame = +3
Query: 132 KTEHIKSKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVE 311
+TE K VD K KK+ S F + +T D YY + + + + + +TN V+
Sbjct: 38 ETEEEAQKYVDD---RKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVK 86
Query: 312 EFLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKD 431
E +K Y P + ++S +EAIA FH +Y K+
Sbjct: 87 EHIKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118
>L25599-2|AAK84536.1| 419|Caenorhabditis elegans Hypothetical
protein F54H12.2 protein.
Length = 419
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 661 MAFTKENDYFVYKANYSNAVLYNNEEQRADILH*GYWHE 777
+A+ ++Y YKA + NA++Y E + + + GY+HE
Sbjct: 96 LAYHNSSNY-AYKAYFENALMYGKEIKNSTLTAAGYFHE 133
>AF016683-4|AAB66195.1| 410|Caenorhabditis elegans Hypothetical
protein K09F6.5 protein.
Length = 410
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 661 MAFTKENDYFVYKANYSNAVLYNNEEQRADILH*GYWHE 777
+A+ ++Y YKA + NA++Y E + + + GY+HE
Sbjct: 117 LAYHNSSNY-AYKAYFENALMYGKEIKNSTLTAAGYFHE 154
>Z99281-13|CAB16522.1| 236|Caenorhabditis elegans Hypothetical
protein Y57G11C.21 protein.
Length = 236
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 688 FVYKANYSNAVLYNNEEQRADILH*GYWHE 777
+ YKA + NA++Y E + + + GY+HE
Sbjct: 125 YAYKAYFENALMYGKEIKNSTLTAAGYFHE 154
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 348 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQ 482
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 348 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQ 482
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 634 SLILKP--QLSMAFTKENDYFVYKANYSNAVLYNNEEQRAD 750
+L+L P +L++ KE F YK+N A+LY E D
Sbjct: 225 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRD 265
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 634 SLILKP--QLSMAFTKENDYFVYKANYSNAVLYNNEEQRAD 750
+L+L P +L++ KE F YK+N A+LY E D
Sbjct: 209 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRD 249
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 634 SLILKP--QLSMAFTKENDYFVYKANYSNAVLYNNEEQRAD 750
+L+L P +L++ KE F YK+N A+LY E D
Sbjct: 206 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRD 246
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 631 ASLILKP--QLSMAFTKENDYFVYKANYSNAVLYNNEEQRADILH 759
++L+L P +LS+ E+ F Y+ ++A+LY E D +H
Sbjct: 252 SALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIH 296
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 117 QQCSTKTEHIKSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 242
Q+ +K +SK+VDA KQK ++ Q V LN +EY
Sbjct: 2267 QKFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 117 QQCSTKTEHIKSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 242
Q+ +K +SK+VDA KQK ++ Q V LN +EY
Sbjct: 2267 QKFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 117 QQCSTKTEHIKSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 242
Q+ +K +SK+VDA KQK ++ Q V LN +EY
Sbjct: 2267 QKFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>AF016681-4|AAB66174.2| 276|Caenorhabditis elegans Hypothetical
protein F22E5.8 protein.
Length = 276
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 123 CSTKTEHIKSKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNY 290
CS K E +++ + F+E ++L + EY +G D I N + Y
Sbjct: 95 CSLKIEPVQAPKIKLRFIENDSQLLQILAAQQKPMLIIEYCMVGNDMSIPYNFNLY 150
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 638 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
N + V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 638 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
N + V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 638 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
N + V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AF039050-3|AAC47936.2| 498|Caenorhabditis elegans Cytochrome p450
family protein 34A6 protein.
Length = 498
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 198 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 317
+F +S ++TDDE +K K+++ E M+N +K + F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,221,732
Number of Sequences: 27780
Number of extensions: 376801
Number of successful extensions: 943
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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