Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K19
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.15 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.34 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.3  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   7.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
           P P  GG  PP PP       PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 562 PPPPPXKKXXGXWXAAXXKKKXXXPPPPP 648
           PPPPP ++  G             PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 562 PPPPPXKKXXGXWXAAXXKKKXXXPPPPP 648
           PPPPP +           + +   PPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 562 PPPPPXKKXXGXWXAAXXKKKXXXPPPPP 648
           P PPP  +      AA   KK   PPPPP
Sbjct: 291 PLPPPSSRVSAAALAA--NKKRPPPPPPP 317



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 562 PPPPPXKKXXGXWXAAXXKKKXXXPPPP 645
           PP PP          A  KK+   PPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 562 PPPPPXKKXXGXWXAAXXKKKXXXPPPPP 648
           PPPPP  +           +    PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 563 PPPPPXKXXVXXGXXPXXKKNXXXXPPPXSFFLXXKXPP 679
           PPPPP          P   ++    PPP S     + PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 720 PXGGGXXPPXPPXNXXXXXPPPP 788
           P G    PP PP       PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 535 FXXGGGGXXPPPPPXKK 585
           F  G GG  PPPPP ++
Sbjct: 686 FEEGTGGRAPPPPPAEE 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,739
Number of Sequences: 5004
Number of extensions: 22019
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)