Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_K19
(809 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 33 0.27
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 33 0.27
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 32 0.63
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.1
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 31 1.5
SB_10945| Best HMM Match : Pinin_SDK_memA (HMM E-Value=8.9) 31 1.5
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 31 1.5
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05) 29 4.5
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 29 5.9
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 28 7.8
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +3
Query: 639 PPPXXFFXXXKXHPXLXFXKKKXXNPQPXGG--GXXPPXPPXNXXXXXPPPP 788
PPP + K +P K NP+P G PP PP PPPP
Sbjct: 429 PPPEPYQDTPKTYPSKNQQKANRGNPRPASSSRGAPPPVPPSR--GPPPPPP 478
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +3
Query: 714 PQPXGGGXXPP---XPPXNXXXXXPPPP 788
PQP GG PP PP PPPP
Sbjct: 365 PQPLGGPPPPPPGRRPPSGKINPPPPPP 392
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +3
Query: 639 PPPXXFFXXXKXHPXLXFXKKKXXNPQPXGG--GXXPPXPPXNXXXXXPPPP 788
PPP + K +P K NP+P G PP PP PPPP
Sbjct: 341 PPPEPYQDTPKTYPSKNQQKANRGNPRPASSSRGAPPPVPPSR--GPPPPPP 390
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +3
Query: 714 PQPXGGGXXPP---XPPXNXXXXXPPPP 788
PQP GG PP PP PPPP
Sbjct: 277 PQPLGGPPPPPPGRRPPSGKINPPPPPP 304
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPG 791
P P G PP PP PPPPG
Sbjct: 924 PPPGGNAPLPPPPPGGSAPSQPPPPG 949
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 720 PXGGGXXPPXPPXNXXXXXPPPP 788
P GG PP PP PPPP
Sbjct: 914 PPGGSVPPPPPPPGGNAPLPPPP 936
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPG 791
P P G P PP PPPPG
Sbjct: 935 PPPGGSAPSQPPPPGGNAPPPPPPPG 960
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 720 PXGGGXXPPXPPXNXXXXXPPPPG 791
P G PP PP PPPPG
Sbjct: 915 PGGSVPPPPPPPGGNAPLPPPPPG 938
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P GG P PP PPPP
Sbjct: 964 PPPGGGAPPLPPPPGGSAPPPPPPP 988
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P GG PP PP PPPP
Sbjct: 355 PPPVGGAAPPPPPPPPVGGPPPPPP 379
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G PP PP PPPP
Sbjct: 306 PPPPSRGSAPPPPPARMGTAPPPPP 330
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G PP PP + PPPP
Sbjct: 317 PPPARMGTAPPPPPPSRSSQRPPPP 341
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPG 791
P GG PP PP PPPPG
Sbjct: 681 PPLPGGAAPPPPPPIGGGAPPPPPPG 706
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P GG PP PP PPPP
Sbjct: 680 PPPLPGGAAPPPPPPIGGGAPPPPP 704
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +3
Query: 714 PQPXG--GGXXPPXPPXNXXXXXPPPP 788
P P G GG PP PP PPPP
Sbjct: 666 PPPGGQAGGAPPPPPPPLPGGAAPPPP 692
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G G PP PP PPPP
Sbjct: 197 PPPPGPGGIPPPPPPIRGGVPPPPP 221
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPG 791
P P GG PP PP PPP G
Sbjct: 198 PPPGPGGIPPPPPPIRGGVPPPPPMG 223
>SB_10945| Best HMM Match : Pinin_SDK_memA (HMM E-Value=8.9)
Length = 280
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -1
Query: 671 FXXXKKXXGGGGGKXXFFFXXAAXXXPXXFFXGGGGGXXPPP 546
F ++ GGGGG F P GGGGG PPP
Sbjct: 154 FLHPQRPGGGGGGT----FVVKMDGTPLLIAGGGGGGGIPPP 191
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P GGG PP PP P PP
Sbjct: 654 PPPPGGGMFPPPPPPPPGGGVPGPP 678
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P GG PP P PPPP
Sbjct: 645 PNPFFGGIPPPPPGGGMFPPPPPPP 669
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPG 791
P P G G P PP PPPPG
Sbjct: 579 PPPPGAGQEGPPPPGAGQGGGPPPPG 604
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 544 GGGGXXPPPPPXKKXXGXWXAAXXKKKXXXPPPPP 648
GGGG PPPPP + PPPPP
Sbjct: 340 GGGGVNPPPPPTNNP----PSPPPPTNNTPPPPPP 370
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 726 GGGXXPPXPPXNXXXXXPPP 785
GGG PP PP N PPP
Sbjct: 341 GGGVNPPPPPTNNPPSPPPP 360
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 702 KXXNPQPXGGGXXPPXPPXNXXXXXPPP 785
K P P G PP PP N PPP
Sbjct: 373 KPPPPPPPTNGPPPPPPPTNGPPPPPPP 400
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPP 785
P P G PP PP N PPP
Sbjct: 387 PPPPTNGPPPPPPPTNGPPPPPPP 410
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G PP PP PPPP
Sbjct: 181 PPPPGAPAAPPAPPFGGPPSAPPPP 205
>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
Length = 974
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 102 IYQLHVCYFHNVKKKPLTN 46
+YQ H C++H ++PLTN
Sbjct: 560 VYQYHGCFYHASHRQPLTN 578
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G PP PP PPPP
Sbjct: 556 PPPPGVDIPPPLPPSEDPKPPPPPP 580
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 545 GGGGXXPPPPPXKXXVXXGXXPXXKKNXXXXPPP 646
GGG PPPPP P PPP
Sbjct: 286 GGGAPVPPPPPADGSAPAPPPPPPPGGAPPPPPP 319
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 726 GGGXXPPXPPXNXXXXXPPPP 788
GG PP PP + PPPP
Sbjct: 287 GGAPVPPPPPADGSAPAPPPP 307
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,487
Number of Sequences: 59808
Number of extensions: 218914
Number of successful extensions: 1129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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