Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_K19
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 0.98
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 0.98
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.3
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 1.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.7
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.9
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 5.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 6.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 6.9
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 720 PXGGGXXPPXPP-XNXXXXXPPPPGXXF 800
P GGG PP PP PPPPG +
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPPGQPY 700
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 720 PXGGGXXPPXPP-XNXXXXXPPPPGXXF 800
P GGG PP PP PPPPG +
Sbjct: 673 PPGGGQGPPPPPQGQQYYGGPPPPGQPY 700
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G G PP PP PPPP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPP 99
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = +2
Query: 506 PPKKXGXFFFXXXGGGGXXPPPPPXKXXVXXGXXPXXKKNXXXXPPPXSFFLXXKXPP 679
PP F G GG PPPP + G P PPP F PP
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPP-----MFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPG 791
P P GG PP PP N PP G
Sbjct: 810 PYPYPGGPVPPGPPQNRMPPPPPAQG 835
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 720 PXGGGXXPPXPPXNXXXXXPPPP 788
P GG PP PP PPPP
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPP 775
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPGXXF 800
P GG PP PP PPPP F
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G PP PP PPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 547 GGGXXPPPPPXKKXXGXWXAAXXKKKXXXPPPPPXXFF 660
GG PPPPP K PPPPP F
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 720 PXGGGXXPPXPPXNXXXXXPPPP 788
P GG PP PP PPPP
Sbjct: 753 PISGGPPPPPPPPGGCPPPPPPP 775
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPGXXF 800
P GG PP PP PPPP F
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G PP PP PPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 547 GGGXXPPPPPXKKXXGXWXAAXXKKKXXXPPPPPXXFF 660
GG PPPPP K PPPPP F
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 720 PXGGGXXPPXPPXNXXXXXPPPP 788
P GG PP PP PPPP
Sbjct: 336 PISGGPPPPPPPPGGCPPPPPPP 358
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPPGXXF 800
P GG PP PP PPPP F
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGF 363
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
P P G PP PP PPPP
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 547 GGGXXPPPPPXKKXXGXWXAAXXKKKXXXPPPPPXXFF 660
GG PPPPP K PPPPP F
Sbjct: 339 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 553 GXXPPPPPXKKXXGXWXAAXXKKKXXXPPPPP 648
G PPPPP A K PPPPP
Sbjct: 549 GGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPP 580
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 551 GGXXPPPPPXKXXVXXGXXPXXKKNXXXXPPPXSFFLXXKXPP 679
GG PPPPP G P + PP + PP
Sbjct: 345 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Frame = +1
Query: 532 FFXXGGGGXXPPPPPXKKXXGXWXAAXXKK-----KXXXPPPPP 648
F G GG PPPPP + G + PPPPP
Sbjct: 325 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 551 GGXXPPPPPXKXXVXXGXXPXXKKNXXXXPPPXSFFLXXKXPP 679
GG PPPPP G P + PP + PP
Sbjct: 355 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Frame = +1
Query: 532 FFXXGGGGXXPPPPPXKKXXGXWXAAXXKK-----KXXXPPPPP 648
F G GG PPPPP + G + PPPPP
Sbjct: 335 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 720 PXGGGXXPPXPPXNXXXXXPPPP 788
P GGG PP PP PPP
Sbjct: 42 PCGGGFGPPPPPFGPVGYALPPP 64
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 562 PPPPPXKKXXGXWXAAXXKKKXXXPPPPPXXF 657
PPPPP + + + PPPPP +
Sbjct: 26 PPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPY 57
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 714 PQPXGGGXXPPXPPXNXXXXXPPPP 788
PQ G PP PP PPPP
Sbjct: 569 PQNLSGAPPPPPPPPPMLGGPPPPP 593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,915
Number of Sequences: 27780
Number of extensions: 214081
Number of successful extensions: 1147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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