Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K18
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0204 - 19022329-19023990                                         30   2.9  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    29   5.1  
11_06_0198 - 21158350-21159528                                         28   8.9  

>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 278 IEKSCDKYMNVDVVKQFMEMYKMGMLPRGETF 373
           + K CD++  + VVK F +M K G+ P   TF
Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +2

Query: 149 VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQF 328
           +F  + +  L  K +E      L  +++ T F D+ ++ ++Y      +K  N DVV   
Sbjct: 160 IFLLKSLDELFQKGREAVDFPALQELMEKTGF-DMDDVVRKYIRYTLNEKPFNPDVVVDL 218

Query: 329 MEMYKMGMLPRGETFVHTNEL 391
           + + K  ML   E     NE+
Sbjct: 219 IHLRKASMLEDAEVAEILNEI 239


>11_06_0198 - 21158350-21159528
          Length = 392

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 570 GGGXGRDPCSRFCGSTRQ*KRRXTCLR 490
           GGG G D C R C   R+   R  C+R
Sbjct: 345 GGGHGGDHCRRQCQHHREWHERQRCMR 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,270,241
Number of Sequences: 37544
Number of extensions: 338869
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)