Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K18
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96102-3|CAE17868.1|  686|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z81491-16|CAE17747.1|  686|Caenorhabditis elegans Hypothetical p...    29   6.0  
Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>Z96102-3|CAE17868.1|  686|Caenorhabditis elegans Hypothetical
           protein D1086.9 protein.
          Length = 686

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 596 RRSRDRSRKEAGQVETLAVGSVEARGSKSVXEHASVDPFSHP 471
           R SR   +K  GQ +        A G K   +HA +DP  HP
Sbjct: 644 RGSRSAGQKGTGQADVEPKPVKRAAGEKG-SQHAEIDPMFHP 684


>Z81491-16|CAE17747.1|  686|Caenorhabditis elegans Hypothetical
           protein D1086.9 protein.
          Length = 686

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 596 RRSRDRSRKEAGQVETLAVGSVEARGSKSVXEHASVDPFSHP 471
           R SR   +K  GQ +        A G K   +HA +DP  HP
Sbjct: 644 RGSRSAGQKGTGQADVEPKPVKRAAGEKG-SQHAEIDPMFHP 684


>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 224 ILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVK-QFMEMYKMGMLPRGETFVHTNELQME 400
           I+ PT      ++    NIE S D  +N+D+ K +F + ++ GM     +      L + 
Sbjct: 272 IMGPTDLNAFDKLKTRENIEMSSDAIVNLDIPKVEFSDGFRDGMKAWNRSVQTWLALYVH 331

Query: 401 EAVXVFRV 424
             V V RV
Sbjct: 332 SRVKVMRV 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,021,866
Number of Sequences: 27780
Number of extensions: 254184
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)