Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K16
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical
           protein R08F11.3 protein.
          Length = 494

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 632 WKAPSCAPPGSEPWPLYRDTLFRLFSLPG 718
           WK  +  PPG  P PL+ +TL  LF +PG
Sbjct: 22  WKRRNL-PPGPTPLPLFGNTLPTLFDIPG 49


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +1

Query: 526 FSIGSAPPDEHHKNRRSSQRWRKPDRTIKIPGVSPLESSLVRSSWFRTLAALPGYPVPP 702
           FS  +    +  K +      +KP  T+K P  +P ESS   +S   TLA  P    PP
Sbjct: 206 FSTNATTSSQTTKPKLIYNEMKKPRTTLK-PSTAPPESSKAPASTGTTLATNPTITGPP 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,043,816
Number of Sequences: 27780
Number of extensions: 385369
Number of successful extensions: 1116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)