Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_K15
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 36 0.011
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.40
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.70
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.92
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.6
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 35.5 bits (78), Expect = 0.011
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -3
Query: 730 PXPXXIGXXEP-GXXNPPFFXGEXKXGFLGGXXIXXXXGXVXGXXXGGTPGGIF*KIGGX 554
P P +G +P G N P G + GF GG G G GG GG GG
Sbjct: 117 PKPKTVGPKKPKGARNGPAGRG-GRGGFRGGRG--GSRGGFGGNSRGGFGGGSRGGFGGG 173
Query: 553 XXGGGGNPFXXGVXGGXXG 497
GG F G GG G
Sbjct: 174 SRGGSRGGFRGGSRGGFRG 192
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +3
Query: 507 PPXTPXXKGFPP--PPXXXPPIF*KIPPGVPPXXXPQTXP 620
PP G PP PP PP+ K GVPP P T P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVP-KPSVGVPPVPPPSTAP 1217
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 748 GGXPAPPNXKXTPVGAXGXPXPHP 819
GG PA P+ +P + G P P P
Sbjct: 819 GGRPALPDEMASPSSSIGHPLPSP 842
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.70
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 495 PPXXPPXTPXXKGFPPPPXXXPP 563
PP PP P GF PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 478 PGGFXPPPXPP-XEPRXKKGSPLPPXXXPQFSKKFP 582
PG PPP PP EP + P PP + K P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 478 PGGFXPPPXPPXEPRXKKGSPLPPXXXPQFSKK 576
P G PPP PP P + S PP P + KK
Sbjct: 5 PPGNPPPPPPP--PGFEPPSQPPPPPPPGYVKK 35
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.92
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 477 PRGXFXPPXXPPXTPXXKGFPPPPXXXPPIF*KIPPGVPPXXXPQTXP 620
P+G PP PP + G PPP PP PP ++ P
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAV-SNPPAPPPAIPGRSAP 401
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 493 PPPXPPXEPRXKKGSPLPPXXXPQFSKKFPXGFPXXGXXKPP 618
PPP PP PLPP P P G PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 495 PPXXPPXTPXXKGFPPPPXXXPPIF*KIPPGVP 593
PP PP P PP PI +P G+P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Frame = +3
Query: 426 PXSXKXXXXPXLXXXPXPRGXFXPPXXPPXTPXXKGFPPPPXXXPPIF*KIPPGVP-PXX 602
P S P L P P PP P PP P P +PP P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAA-PPLPPAAPAPPP 478
Query: 603 XPQTXP 620
P P
Sbjct: 479 APAPAP 484
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 498 PXXPPXTPXXKGFPPPPXXXPPIF*KIPPGVPP 596
P P TP K PPP PP+ I P +PP
Sbjct: 731 PPTPAPTPAVKHHPPP----PPVRSSISPSMPP 759
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Frame = +3
Query: 453 PXLXXXPXPRGXFXPPXXPPXTPXXK-----GFPPPPXXXPPIF*KIPPGVPPXXXPQTX 617
P P P+ PP P P PP P PPI +PP P ++
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 618 P 620
P
Sbjct: 185 P 185
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 471 PXPRGXFXPPXXPPXTPXXKGFPPPPXXXPP 563
P P P PP P G PPP PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 495 PPXXPPXTPXXKGFPPPPXXXPPIF*KIPPGVPP 596
P PP P G PPPP P + PP PP
Sbjct: 748 PIPVPPPAPIMGG-PPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +3
Query: 471 PXPRGXFXPPXXPPXTPXXKGFPPPPXXXPPI 566
P P PP PP G PPPP P +
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.1
Identities = 26/84 (30%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Frame = -2
Query: 719 GYWFXGTGXXKPPLFXGGXQKXV-FGGGXNXFXXRGGLXXPXXG--NPXGNFLENWGXXX 549
G+ G G PP GG FGG + GG G G F G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Query: 548 GGRGEPFXXRGSXGGXGGGKXPPG 477
GG G G GG GG PG
Sbjct: 249 GGLGGFGGGPGGFGGGPGGHGGPG 272
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +3
Query: 477 PRGXFXPPXXPPXTPXXKGFPPPPXXXPPIF*KIPPGVPPXXXP 608
P+ P P P PPP PP+ PP PP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPM-PAGPPSAPPPPLP 1736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.151 0.521
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,347
Number of Sequences: 5004
Number of extensions: 23776
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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