Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_K14
(1184 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 35 0.11
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 35 0.11
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 35 0.15
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 32 0.78
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 26 8.2
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 35.1 bits (77), Expect = 0.11
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Frame = -3
Query: 894 PXXXPXRXPVXXXXPXXRX----PPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXX 727
P P R V P R PP + P + PP P P G P P
Sbjct: 319 PPPPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGR 378
Query: 726 FXXXXSXXPPPXPPP 682
PPP PPP
Sbjct: 379 RPPSGKINPPPPPPP 393
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 35.1 bits (77), Expect = 0.11
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Frame = -3
Query: 894 PXXXPXRXPVXXXXPXXRX----PPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXX 727
P P R V P R PP + P + PP P P G P P
Sbjct: 231 PPPPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGR 290
Query: 726 FXXXXSXXPPPXPPP 682
PPP PPP
Sbjct: 291 RPPSGKINPPPPPPP 305
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 34.7 bits (76), Expect = 0.15
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -3
Query: 837 PPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXXFXXXXSXXPPPXPPP 682
PP P P PP P P G P P PPP PPP
Sbjct: 696 PPPPPPPPLLSGTLPMPPPPPPPPPGCAGLPPPPPSPQPGCAGLPPPPPPPP 747
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 34.3 bits (75), Expect = 0.19
Identities = 19/67 (28%), Positives = 21/67 (31%)
Frame = -3
Query: 882 PXRXPVXXXXPXXRXPPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXXFXXXXSXX 703
P + V P PP P TP PP P P G P P +
Sbjct: 677 PIQTMVPPPPPPPPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSPAGSPSGTSAGN 736
Query: 702 PPPXPPP 682
P PPP
Sbjct: 737 PQQQPPP 743
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 32.3 bits (70), Expect = 0.78
Identities = 19/66 (28%), Positives = 19/66 (28%)
Frame = -3
Query: 870 PVXXXXPXXRXPPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXXFXXXXSXXPPPX 691
P P PP P P PP P P P P PPP
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Query: 690 PPPXXA 673
PPP A
Sbjct: 428 PPPPPA 433
Score = 31.5 bits (68), Expect = 1.4
Identities = 20/72 (27%), Positives = 21/72 (29%)
Frame = -3
Query: 897 TPXXXPXRXPVXXXXPXXRXPPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXXFXX 718
+P P P P PP P P PP P P P P
Sbjct: 364 SPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPP---PPPPPPPPPAP 420
Query: 717 XXSXXPPPXPPP 682
PPP PPP
Sbjct: 421 PPPPPPPPPPPP 432
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.9 bits (69), Expect = 1.0
Identities = 19/74 (25%), Positives = 21/74 (28%)
Frame = -3
Query: 894 PXXXPXRXPVXXXXPXXRXPPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXXFXXX 715
P P P P P P P PP P P P P +
Sbjct: 155 PYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPP 214
Query: 714 XSXXPPPXPPPXXA 673
+ PP PPP A
Sbjct: 215 PNAPNPPYPPPPNA 228
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/71 (26%), Positives = 21/71 (29%)
Frame = -3
Query: 894 PXXXPXRXPVXXXXPXXRXPPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXXFXXX 715
P P P P PP P P PP P P P P +
Sbjct: 92 PPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPP 151
Query: 714 XSXXPPPXPPP 682
+ PP PPP
Sbjct: 152 PN---PPYPPP 159
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -3
Query: 852 PXXRXPPXXRTXPXXXXXTPXPPTPLXXPAXFXGXPXHPRXXFXXXXSXXPPPXPPP 682
P PP P P PP P P + P P PPP PP
Sbjct: 130 PPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPP 186
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = -1
Query: 815 PXPXXXPPHPPPXXXAPPXFXAXXXTHXXXSXXXXXSXXPRXPPPS 678
P P PP PPP PP H P PPP+
Sbjct: 102 PPPPPPPPPPPPPPPPPPPITLHHEQHVVSHVMHPAPPPPPPPPPA 147
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.1 bits (67), Expect = 1.8
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Frame = -3
Query: 915 SGXRXXTPXXXPXRXPVXXXXPXXRXPPXXRTXPXXXXXTPXPPT--PLXXPAXFXGXPX 742
SG P P P P PP P P PPT P P G P
Sbjct: 339 SGGGGVNPPPPPTNNPPSPPPPTNNTPPPP--PPTNKPPPPPPPTNGPPPPPPPTNGPPP 396
Query: 741 HPRXXFXXXXSXXPPPXPPP 682
P + PPP PPP
Sbjct: 397 PP------PPTNGPPPPPPP 410
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.9 bits (64), Expect = 4.1
Identities = 21/81 (25%), Positives = 21/81 (25%)
Frame = -3
Query: 924 ASXSGXRXXTPXXXPXRXPVXXXXPXXRXPPXXRTXPXXXXXTPXPPTPLXXPAXFXGXP 745
AS G P P P P P P PP P G P
Sbjct: 912 ASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAP 971
Query: 744 XHPRXXFXXXXSXXPPPXPPP 682
P PPP PPP
Sbjct: 972 PLPPPPGGSAPPPPPPPPPPP 992
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 25.8 bits (54), Expect(2) = 8.2
Identities = 19/68 (27%), Positives = 19/68 (27%)
Frame = -1
Query: 815 PXPXXXPPHPPPXXXAPPXFXAXXXTHXXXSXXXXXSXXPRXPPPSXXGXXXXXXTXXPX 636
P PP PP APP A T S P PPPS P
Sbjct: 299 PPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRP--PPPSRGAPPPPSMGMAPP 356
Query: 635 PXXXLXXP 612
P P
Sbjct: 357 PVGGAAPP 364
Score = 21.4 bits (43), Expect(2) = 8.2
Identities = 9/28 (32%), Positives = 9/28 (32%)
Frame = -1
Query: 527 PXXXHPPXXXXXPAXRPXXXXXRXPPGP 444
P PP P P PPGP
Sbjct: 380 PIEGRPPSSLGNPPPPPPPGRGAPPPGP 407
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = +2
Query: 683 GGGXGGGXXXXXXXXXXRGXXGXPXNXAGXXXGVGGXGVXXXXXGXVRXXGGXRXXGXXX 862
GGG G G RG G G GG G G R GG G
Sbjct: 136 GGGEGNGAGGGIGRGGGRGRGGGEGGWGGRGGNGGGRGGGEGGGGRGRGTGGGSRGGGGD 195
Query: 863 XTGXRXG 883
G G
Sbjct: 196 GRGRGRG 202
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,746,451
Number of Sequences: 59808
Number of extensions: 126638
Number of successful extensions: 1303
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3657251350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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