Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_K13
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 163 2e-41
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 159 4e-40
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 29 0.64
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.64
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 2.0
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 2.6
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 3.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.0
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 6.0
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 6.0
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 163 bits (397), Expect = 2e-41
Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 4/177 (2%)
Frame = +1
Query: 94 HDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLAR 273
H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S++A
Sbjct: 9 HVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAA 68
Query: 274 --HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 447
K + EG V+VGTVT+D RL +PK++VAAL T+ ARARIL AGGE+LT DQL
Sbjct: 69 LTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQL 128
Query: 448 ALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 612
ALRAPTG TVL++G+++AREA RHFG P H PYVR++G E+AR R++
Sbjct: 129 ALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERARGRRKS 182
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 159 bits (387), Expect = 4e-40
Identities = 82/177 (46%), Positives = 118/177 (66%), Gaps = 4/177 (2%)
Frame = +1
Query: 94 HDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLAR 273
H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S++A
Sbjct: 9 HVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAA 68
Query: 274 --HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 447
K + + VVVGTVT+D R+ +PK+++AAL T+ ARARIL AGGE+LT DQL
Sbjct: 69 LTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQL 128
Query: 448 ALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 612
ALRAPTG TVLV+G+++AREA RHFG P H PYVR++G E+AR R++
Sbjct: 129 ALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERARGRRKS 182
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 29.5 bits (63), Expect = 0.64
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 473 RQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRDMKKQGPVVVLM 616
R +YK SE ++ Q + +LQ+ ALT N + + + G +VVL+
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPNLLARTIETVEGGGIVVLL 151
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.64
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 301 LIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 477
L+ +VV +TNDVRL++I + + H E A L A +++ + T KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752
Query: 478 VLVQGQRNAREAVRHFGPAPG 540
V+G EA + G PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 334 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 447
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 435 SKNFSSSSQNACTSFFGNMKSSHRH 361
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 413 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 553
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 529 PAPGAPRSHTKPYVRTKGHEKARPSRRANV*FLI*GLHTPXPP-XPXXPPXP 681
PAP P T P T + PSR NV L ++ P PP P PP P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMPSR--NVNNLGSQVNIPPPPATPSQPPRP 285
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 432 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 319
KN+ SS + TS + N+ +S+R +R +QS V + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -1
Query: 567 IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 403
+G S+ A W RA + C I L+ + + TK + KN SS++ A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363
Query: 402 CTSFF 388
C+SFF
Sbjct: 364 CSSFF 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,075
Number of Sequences: 5004
Number of extensions: 64597
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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