Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K13
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              167   8e-42
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   4.9  
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.5  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  167 bits (407), Expect = 8e-42
 Identities = 88/174 (50%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
 Frame = +1

Query: 91  KHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA 270
           KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S++RL 
Sbjct: 115 KHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLARLV 174

Query: 271 RHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLA 450
           R MK    +  I VVVG++T+D R++++P + + AL  +E ARARIL AGGEILTFDQLA
Sbjct: 175 RKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLA 234

Query: 451 LRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTK-----PYVRTKGHEKAR 597
           LRAP G+ TVL+QG R AREA RH G APG P S T       Y+ T G  + R
Sbjct: 235 LRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDTNWCGDLDYIGTDGDAQCR 288


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 462 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 352
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 386 VT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 291
           +T R  T++FGIL  L +     TT  IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +1

Query: 259 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 438
           SRL   MK PT++G+   V   V+      +   +T A     E+ RAR+L   G +   
Sbjct: 92  SRLYEEMKHPTQDGMFVAVNSEVSVTFVGKEKEDVTFAKCAWFER-RARMLKGFGFVTFR 150

Query: 439 DQLALRAPTGKKTVLVQGQ 495
           D   + +   KK  ++ G+
Sbjct: 151 DPATIESVLAKKPHILDGK 169


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 421 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 552
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 365 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 484
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,359,076
Number of Sequences: 59808
Number of extensions: 525907
Number of successful extensions: 1490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)