Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K11
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta...    31   0.76 
At5g10160.1 68418.m01176 beta-hydroxyacyl-ACP dehydratase, putat...    30   2.3  
At2g22230.1 68415.m02638 beta-hydroxyacyl-ACP dehydratase, putat...    29   5.4  

>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-1) nearly identical to
           starch branching enzyme class II [Arabidopsis thaliana]
           GI:619939
          Length = 858

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 243 MIFIHNFHWINAGGDFAIG-TVPAVF-LRVDSYN 148
           ++F+ NFHW N+  D+ IG +VP  + + +DS N
Sbjct: 760 LLFVFNFHWTNSYSDYRIGCSVPGKYKIVLDSDN 793


>At5g10160.1 68418.m01176 beta-hydroxyacyl-ACP dehydratase, putative
           similar to beta-hydroxyacyl-ACP dehydratase from
           Toxoplasma gondii [GI:3850997]; contains Pfam profile
           PF01377 Thioester dehydratase
          Length = 219

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +1

Query: 76  NQFPVLRIE-IMKFTVAFALIAMFAIVAVNSQENGGDSPDGEVAPGVDPVKVVDEDHGVN 252
           ++FP L ++ ++++T   + +A+   V +N     G  P+  + PGV  V+ + +  G+ 
Sbjct: 86  HRFPFLLVDRVIEYTAGVSAVAI-KNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGIV 144

Query: 253 IVDGEPGG 276
           ++  E GG
Sbjct: 145 MLQPEVGG 152


>At2g22230.1 68415.m02638 beta-hydroxyacyl-ACP dehydratase, putative
           similar to beta-hydroxyacyl-ACP dehydratase from
           Toxoplasma gondii [GI:3850997]; contains Pfam profile
           PF01377 Thioester dehydratase
          Length = 220

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +1

Query: 76  NQFPVLRIE-IMKFTVAFALIAMFAIVAVNSQENGGDSPDGEVAPGVDPVKVVDEDHGVN 252
           ++FP L ++ ++++T   + +A+   V +N     G  P+  + PGV  ++ + +  G+ 
Sbjct: 87  HRFPFLLVDRVIEYTPGVSAVAI-KNVTINDNFFPGHFPERPIMPGVLMIEAMAQVGGIV 145

Query: 253 IVDGEPGG 276
           ++  E GG
Sbjct: 146 MLQPEVGG 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,500
Number of Sequences: 28952
Number of extensions: 275271
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)