Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K10
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   2.8  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   8.7  

>SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
 Frame = +3

Query: 138 TGRWSSPREPMVNLDMKMK-ELCIMKLLDHILQPT----MFEDIKEIAKEYNIEKSCDKY 302
           TG++S       NL +++  E   + ++ H L+      + ++I  I K++   K  +K 
Sbjct: 32  TGKYSGSAHQECNLKLRINPEEIKVPVIFHNLRGYDSHYIMQEIGAIVKKHT-HKGEEKQ 90

Query: 303 MNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKV 416
           MN++ +   MEMY   ML    TF+ + +       K+
Sbjct: 91  MNINAIPNNMEMYMAFMLGNHLTFIDSFQFMSSSLEKL 128


>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 351 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 521
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 522 A 524
           +
Sbjct: 280 S 280


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 462 TACWMRERINGGMFVYAFTAACFHR 536
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,281,619
Number of Sequences: 59808
Number of extensions: 462114
Number of successful extensions: 1204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)