Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K08
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    28   1.9  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    26   5.9  

>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -1

Query: 720 PSSFIHXSNNSATKGQAGVHVLKSALGXHFXFISVSNVTGII---ATGNEFSXRPESLAP 550
           P S++  S  S+     G    K+  G  F +  VSNVTG+I   A G EF     +L  
Sbjct: 409 PCSYLCYSLASSCPLDLGFACPKAGYGLEFSYGEVSNVTGLITCNAPGVEFYESGSALLN 468

Query: 549 RDFVSWCT 526
              +SW T
Sbjct: 469 ---ISWRT 473


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 711 FIHXSNNSATKGQAGVHVLKSALGXHFXFISVSNVTGIIATGNEFSXRPESLA 553
           F   ++ + T   AG H    A+G  F FI + +   IIA G+E    P ++A
Sbjct: 159 FTALNHTTTTACAAGCH----AIGDAFNFIKLGHADVIIAGGSESCINPLTVA 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,377
Number of Sequences: 5004
Number of extensions: 55995
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)