Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K08
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                  108   5e-24
SB_40475| Best HMM Match : Pkinase (HMM E-Value=6.5e-05)               29   6.3  

>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score =  108 bits (260), Expect = 5e-24
 Identities = 46/84 (54%), Positives = 62/84 (73%)
 Frame = +2

Query: 95  RIVVYGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNITVPKDASWVEQEDHVVNEL 274
           R+++YGG+GALGA CV++FK+  +WVA++DL PNE+A  N+ V    SW EQ + V  ++
Sbjct: 95  RVLIYGGKGALGATCVSYFKAREWWVASVDLFPNEEAHANVIVDPAKSWDEQNNEVQKKV 154

Query: 275 GNALQGQKVNAIICVAGGWAGGNA 346
              L G K+NAIICVAGGWAGG A
Sbjct: 155 DELLDGNKLNAIICVAGGWAGGTA 178



 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 37/59 (62%), Positives = 43/59 (72%)
 Frame = +2

Query: 494 GMIGYGMAKAAVHQLTKSLGAKDSGLXENSLPVAIMPVTLDTEMNXKXMPKADFSTWTP 670
           GM+GYGMAKAAVHQLT  LG   + L  +S  +AI+P TLDT MN K MP+AD S WTP
Sbjct: 182 GMLGYGMAKAAVHQLTVGLGMDGNTLPPDSTALAILPNTLDTPMNRKFMPEADQSQWTP 240


>SB_40475| Best HMM Match : Pkinase (HMM E-Value=6.5e-05)
          Length = 238

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 430 VLKHWWFVGFNWCKSSLRSHPRN 498
           ++KH WF GFNW    LRS   N
Sbjct: 181 IMKHKWFDGFNW--DGLRSRKLN 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,080,679
Number of Sequences: 59808
Number of extensions: 433927
Number of successful extensions: 1174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)