Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K08
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...   221   4e-58
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score =  221 bits (541), Expect = 4e-58
 Identities = 110/214 (51%), Positives = 140/214 (65%), Gaps = 2/214 (0%)
 Frame = +2

Query: 92  GRIVVYGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNITVPKDASWVEQEDHVVNE 271
           G+++VYGG+GALG+A +  FK   Y V NIDL+ N++AD NI V  + +W EQE  ++ +
Sbjct: 4   GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQ 63

Query: 272 LGNALQGQKVNAIICVAGGWAGGNA-AKDLSKQADLMWRQSVWSSSIAATLAAKYXXXXX 448
             ++LQG +V+ + CVAGGWAGG+A +KD  K ADLM +QSVWSS+IAA LA  +     
Sbjct: 64  TASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGG 123

Query: 449 XXXXXXXXXXXXXXPGMIGYGMAKAAVHQLTKSLGAKDSGLXENSLPVAIMPVTLDTEMN 628
                         P MIGYGMAKAAVH LT SL AKDSGL +NS  + IMPVTLDT MN
Sbjct: 124 LLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMN 183

Query: 629 XKXMPKADFSTWTPA*PFVAELFXKWMXD-EGRP 727
            K MP AD S+WTP   F++E   KW  +   RP
Sbjct: 184 RKWMPNADHSSWTPL-SFISEHLLKWTTETSSRP 216


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 226 GDSNVKISFFVGIQINVSDPIIKRFKMVHAGSTQCPTTTVHDD 98
           GDSN+ ++ +V   + V D  I      + GS+Q P  T+H +
Sbjct: 237 GDSNIFLASYVSGNLYVYDQRISAASSNNNGSSQPPPWTIHKE 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,877
Number of Sequences: 27780
Number of extensions: 323842
Number of successful extensions: 736
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)