Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K08
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.50 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 430 VLKHWWFVGFNW 465
           + KH WF GFNW
Sbjct: 620 IQKHKWFDGFNW 631


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 158 FNYWVANIDLNPNEKADFNITVPKDASWVE 247
           FN +VA+I+    E  DF + +    SW+E
Sbjct: 15  FNIFVADINSINVEDMDFRVDMFVRQSWIE 44


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 89  PGRIVVYGGRGALGAACVN 145
           P R++VY     LGAAC++
Sbjct: 155 PRRMIVYVSLVWLGAACIS 173


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +1

Query: 112 WSWGIGCC 135
           W WG+G C
Sbjct: 100 WQWGLGIC 107


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 183 SMLATQ*LKDLKWFTQAAPNAPRPPYTTILPGSHYNVFSRSQLRTDSNLKN 31
           S++  Q L +L W        P PPY+  L  S Y +F RS L+   N KN
Sbjct: 252 SLVTRQKLLELGWDV-----LPHPPYSPDLAPSDYFLF-RS-LQNSLNGKN 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,672
Number of Sequences: 438
Number of extensions: 4201
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)