Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K08
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar ...    29   3.9  
At3g16555.1 68416.m02115 F-box family protein contains F-box dom...    28   6.8  

>At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
           Eucalyptus gunnii [GI:2058311]
          Length = 321

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 92  GRIVVYGGRGALGAACVNHFKSFNYWVANIDLNP-NEK 202
           G++ V G  G LG+  VNH  S +Y+V     +P NEK
Sbjct: 7   GKVCVTGAGGFLGSWVVNHLLSRDYFVHGTVRDPGNEK 44


>At3g16555.1 68416.m02115 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 349

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 544 ISGC*GLW-SXREFITCSYNACYIGYRNEXKMXAQSXLQYMDSR 672
           I+ C G W    E+    +N C +GY N         L+Y++ R
Sbjct: 97  ITACDGRWIKWIEYENKGFNVCGVGYDNTRPEKVYKILEYLECR 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,454
Number of Sequences: 28952
Number of extensions: 309556
Number of successful extensions: 797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)