Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K06
         (900 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   4.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   7.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.9  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 565 PXPXXPPXPXPPXXXP 612
           P P  PP P PP   P
Sbjct: 176 PLPQVPPLPLPPIFAP 191


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 565 PXPXXPPXPXPPXXXP 612
           P P  PP P PP   P
Sbjct: 176 PLPQVPPLPLPPIFPP 191



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/43 (27%), Positives = 12/43 (27%)
 Frame = +2

Query: 719 PXAPPXPXXXXPPPPXXPXXXXXXXPPXXXXPPPXSPPXSXPP 847
           P   P P    P P   P        P     PP   P   PP
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 710 PPXPXAPPXPXXXXPPP 760
           PP P  PP P     PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 141  PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTV 269
            P  K + ++     + S   P TT   +T T  STT   T TV
Sbjct: 1157 PGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTV 1199



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 816  PPXPPPXXPPPXP 854
            PP PP    PP P
Sbjct: 1376 PPIPPTSEKPPLP 1388


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 857 GGXGGGXXGGGXGGGG 810
           GG GGG  G    GGG
Sbjct: 93  GGRGGGRDGDRGDGGG 108


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 813 PPPXPPPXXPPPXPPXXP 866
           P    PP  P P PP  P
Sbjct: 110 PSGNVPPLTPSPGPPSHP 127


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +3

Query: 789 PXPPXXXXPPPXPPPXXPPPXPPXXP 866
           P  P        PPP  P   PP  P
Sbjct: 724 PLTPHEAFDVKLPPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +3

Query: 789 PXPPXXXXPPPXPPPXXPPPXPPXXP 866
           P  P        PPP  P   PP  P
Sbjct: 616 PLTPHEAFDVKLPPPPHPHHQPPRNP 641


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 63  FSACDNS*SYKNEILHDFPSS 125
           FS C+N+ +YK+E  +  PSS
Sbjct: 63  FSPCNNTANYKSEAQNQ-PSS 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,540
Number of Sequences: 336
Number of extensions: 4296
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)