Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K06
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.076
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.076
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +3

Query: 747 PXPPPXXXPPXXXXPXPPXXXX-PPPXPPPXXPPPXPP 857
           P P P   P       PP     PPP  PP  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.71
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +3

Query: 774 PXXXXPXPPXXXXPPPXPPPXXPPPXPPXXPXXPXXPPXXP 896
           P    P P       P  P    PP P   P  P  PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGP-PPGGPPGAP 55



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +3

Query: 759 PXXXPPXXXXPXPPXXXXPPPXPPPXXPPPXPPXXP 866
           P   P     P  P    PP  P    PP  PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPP-NPSQGPPPGGPPGAP 55


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 759  GGGXXXXGXGGAXGXGG 709
            GGG    G GG  G GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 759  GGGXXXXGXGGAXGXGG 709
            GGG    G GG  G GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +3

Query: 171 LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 305
           +TT  T+     TTT   T  N +     T   P+ D      LS
Sbjct: 658 ITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKELS 702


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 816 PPXPPPXXPPP 848
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 825 PPPXXPPPXPP 857
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 250  CILRGPSPRPTLLQA 294
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = -3

Query: 841 GXXGGGXGGGXXXXGGXGXXXXGGXXXGGGXG 746
           G  G    GG       G    G    GGG G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,713
Number of Sequences: 438
Number of extensions: 10018
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)