Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K05
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17830.1 68418.m02090 hypothetical protein contains Pfam doma...    32   0.56 
At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase, puta...    29   4.0  
At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At5g33303.1 68418.m03951 hypothetical protein                          28   9.1  
At3g57290.1 68416.m06377 eukaryotic translation initiation facto...    28   9.1  
At1g78090.1 68414.m09100 trehalose-6-phosphate phosphatase (TPPB...    28   9.1  

>At5g17830.1 68418.m02090 hypothetical protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 474

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 477 YSCLYVCDTIVDISAVFLSWRLSSIPVSLFLSLVSQSHP 361
           ++C +VC+    + A F    L +I V LFL L+ +S+P
Sbjct: 109 WNCFFVCNIRATVKATFWFTPLFTISVGLFLILLDKSNP 147


>At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 349

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 380 KERNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWK 505
           +ER +  GIL+S+  K T+   ++       E+LQ+L+E WK
Sbjct: 303 RERRQGLGILVSKFPKETSASYSLQEPDEVMEFLQRLVE-WK 343


>At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR domains: Pfam profile:
           PF01535: PPR repeat
          Length = 690

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 629 LQQGNK*SVSFVLCRSTLLTELTKCHRVTNTSPYF 525
           L Q NK S    +C + ++  L KCHR+ + S +F
Sbjct: 591 LMQRNKISADIAVC-NVVIHLLFKCHRIEDASKFF 624


>At5g33303.1 68418.m03951 hypothetical protein
          Length = 336

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 49  IDRLR*SPQVVSKMYFTKIVFIRHHLHND 135
           +D ++   Q  SK     ++F+RHHLH D
Sbjct: 32  LDTIKDGNQTPSKDKSKAMIFLRHHLHED 60


>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 102 FCKIHFRNDLWALAESINRN 43
           +CKIH R D+  LAE +N N
Sbjct: 353 YCKIHQRIDMGVLAEKLNLN 372


>At1g78090.1 68414.m09100 trehalose-6-phosphate phosphatase (TPPB)
           identical to trehalose-6-phosphate phosphatase (AtTPPB)
           GI:2944180 [Arabidopsis thaliana]
          Length = 374

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +2

Query: 380 KERNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWK 505
           +ER +  GIL+S+  K+T    ++   +  +++L++L+E WK
Sbjct: 327 RERGQGFGILVSKVPKDTNASYSLQDPSQVNKFLERLVE-WK 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,412,538
Number of Sequences: 28952
Number of extensions: 273644
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)