Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K03
         (953 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 171  PXRGVSKPPKNXERGPQGXFXXNPPI 94
            P +G + PP +   GP      +PP+
Sbjct: 1105 PLKGTAVPPPSGSSGPGSTGSKSPPV 1130


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = -3

Query: 165 RGVSKPPKNXERGPQGXFXXNPPIFWKGKLKIPQKFL*REFPP 37
           R +  PP N        +  NP I   G    P  FL   +PP
Sbjct: 134 RVMMSPPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPP 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,250
Number of Sequences: 336
Number of extensions: 1327
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26892580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)