Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K03
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.24 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP  F      PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP   F     PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP      +  PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP         PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP         PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP         PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 567 PXXFFFXPPPPPXXFFXKKXXPPPPP 644
           P      PPPPP         PPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
           P PPP         PPPPP      P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGP 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,581
Number of Sequences: 5004
Number of extensions: 19154
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)