Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K03
         (953 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   30   2.4  
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      29   4.2  
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         28   9.7  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.7  
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.7  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               28   9.7  

>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP  F+     PPPPP
Sbjct: 51  PPPPPPRFYDNDIPPPPPP 69



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP   F     PPPPP
Sbjct: 50  PPPPPPPRFYDNDIPPPPP 68



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP   F     PPPPP
Sbjct: 65  PPPPPRRGFYDDYPPPPPP 83



 Score = 29.1 bits (62), Expect = 5.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPP   F+     PPPPP
Sbjct: 66  PPPPRRGFYDDYPPPPPPP 84


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
           PPPPP   F     PPPPP      P
Sbjct: 198 PPPPPPPGFPGGAPPPPPPPFGAPPP 223



 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
           PPPPP  F      PPPPP      P
Sbjct: 199 PPPPPPGFPGGAPPPPPPPFGAPPPP 224


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 582 FXPPPPPXXFFXKKXXPPPPP 644
           F PPPPP     +   PPPPP
Sbjct: 309 FAPPPPPPEPTSELPPPPPPP 329


>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 643 GGGGGXFFXXKKXXGGGGG 587
           GGGGG F+      GGGGG
Sbjct: 124 GGGGGGFYQDSYGGGGGGG 142


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP         PPPPP
Sbjct: 698 PPPPPPLLSGTLPMPPPPP 716


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 588  PPPPPXXFFXKKXXPPPPP 644
            PPPPP         PPPPP
Sbjct: 1162 PPPPPPPSSPSPPPPPPPP 1180


>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 591 PPPPXXFFXKKXXPPPPP 644
           PPPP     K   PPPPP
Sbjct: 587 PPPPAHHVNKPGVPPPPP 604


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP         PPPPP
Sbjct: 928 PPPPPELLGSDADLPPPPP 946


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 588 PPPPPXXFFXKKXXPPPPP 644
           PPPPP      +  PPPPP
Sbjct: 217 PPPPPPSPSPPRPPPPPPP 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,339,027
Number of Sequences: 59808
Number of extensions: 192185
Number of successful extensions: 1080
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2800542235
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)