Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_K03
(953 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 2.1
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 30 2.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.8
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 30 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.9
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 29 4.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 4.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.5
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 28 8.6
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 28 8.6
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP K PPPPP
Sbjct: 159 PPPPPVSVPSSKPTPPPPP 177
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP K PPPPP
Sbjct: 159 PPPPPVSVPSSKPTPPPPP 177
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP ++ PPPPP
Sbjct: 71 PPPPPLISILQQAPPPPPP 89
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP + PPPPP
Sbjct: 70 PPPPPPLISILQQAPPPPP 88
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP F PPPPP
Sbjct: 772 PPPPPPGGFKGGPPPPPPP 790
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
PPPPP F K PPPPP P
Sbjct: 773 PPPPPGGF---KGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP F PPPPP
Sbjct: 772 PPPPPPGGFKGGPPPPPPP 790
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
PPPPP F K PPPPP P
Sbjct: 773 PPPPPGGF---KGGPPPPPPPGMFAP 795
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +3
Query: 579 FFXPPPPPXXFFXKKXXP--PPPPXXXXXXP 665
FF PPPP FF P PPPP P
Sbjct: 20 FFERPPPPDWFFPGPLRPWGPPPPWHRNRGP 50
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP F PPPPP
Sbjct: 355 PPPPPPGGFKGGPPPPPPP 373
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
PPPPP F K PPPPP P
Sbjct: 356 PPPPPGGF---KGGPPPPPPPGMFAP 378
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
PPPPP + PPPPP P
Sbjct: 335 PPPPPGMRYPGGMPPPPPPRYPSAGP 360
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
PPPPP + PPPPP P
Sbjct: 345 PPPPPGMRYPGGMPPPPPPRYPSAGP 370
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP PPPPP
Sbjct: 2278 PPPPPGYMHTPPLPPPPPP 2296
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP PPPPP
Sbjct: 578 PPPPPPPMLGGPPPPPPPP 596
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 591 PPPPXXFFXKKXXPPPPP 644
PPPP F PPPPP
Sbjct: 1377 PPPPPLFSPSMILPPPPP 1394
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPPXXXXXXP 665
PPPPP PPPPP P
Sbjct: 1344 PPPPPSDDLTPVPPPPPPPPTMSKAP 1369
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP PPPPP
Sbjct: 538 PPPPPPVGMANGGPPPPPP 556
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 588 PPPPPXXFFXKKXXPPPPP 644
PPPPP PPPPP
Sbjct: 589 PPPPPTLAQSSSNIPPPPP 607
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,640,961
Number of Sequences: 27780
Number of extensions: 179041
Number of successful extensions: 1046
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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