Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K02
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.22 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +3

Query: 75  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 254
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 255 KGSIIQNVVNNLIIDKRRNTMEYCYKL 335
              +  N+    I      TMEY  +L
Sbjct: 58  PAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +3

Query: 75  PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 254
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 255 KGSIIQNVVNNLIIDKRRNTMEYCYKL 335
              +  N+    I       MEY  +L
Sbjct: 58  PAIVRVNLFVRSIATISDIKMEYSVQL 84


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 151 ADSSTTPALAASMHIANTTRSFILLGAFQI 62
           A+   +  +A  +HI+N T SF L G F++
Sbjct: 396 ANKMESSGMAGRVHISNATLSF-LNGEFEV 424


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 694 SSQPXXVPKRPSWFFIYQSPISTMPLEXGYXP*TALPET 810
           SSQP   P++  + F+  S +ST      Y P    P T
Sbjct: 816 SSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPST 854


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 695 LPSPPXYQNDXPGSSSTNRQFQRCPWSXGTIXEPPSR 805
           LP+ P Y N   GS+  +R +   P+        P R
Sbjct: 80  LPTTPEYNNHLYGSTPDSRDYFSRPFEKRLHSRLPGR 116


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 209 VAGEDAVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYNEKFHFVRSLSDRLQVC 48
           + GE   V FL  ++V        DA+   +     YN+    V + SD L+VC
Sbjct: 4   IIGETLRVWFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 209 VAGEDAVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYNEKFHFVRSLSDRLQVC 48
           + GE   V FL  ++V        DA+   +     YN+    V + SD L+VC
Sbjct: 4   IIGETLRVWFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVC 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,560
Number of Sequences: 438
Number of extensions: 4377
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)