Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K01
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-7|CAF31478.1|  314|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    28   7.5  

>Z79757-7|CAF31478.1|  314|Caenorhabditis elegans Hypothetical
           protein F55B12.9 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = -2

Query: 407 CFSISLFGLTITSFL*YFFLKL------YRSISLCXTTTLYLILFVFL 282
           C  ISLFG  +  FL Y FL+       ++ I L  T   ++I F FL
Sbjct: 13  CLIISLFGSAVNFFLFYKFLRRDGKPNGFQKICLVKTLPNFVICFAFL 60


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -2

Query: 398 ISLFGLTITSFL*YFFLKLYRS--ISLCXTTTL--YLILFVFL 282
           +S  G+ I  ++ YFFLKL ++    LC + T+   +ILF +L
Sbjct: 18  VSFCGILINFYMFYFFLKLQKTSFYVLCSSKTISNSIILFAYL 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,124
Number of Sequences: 27780
Number of extensions: 202650
Number of successful extensions: 462
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)