Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_K01
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17830.1 68418.m02090 hypothetical protein contains Pfam doma...    30   1.7  
At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase, puta...    28   9.3  

>At5g17830.1 68418.m02090 hypothetical protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 474

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 484 YSCLXVCDTIVDISAVFLSWRLSSIPVSLFLSLVSQSHP 368
           ++C  VC+    + A F    L +I V LFL L+ +S+P
Sbjct: 109 WNCFFVCNIRATVKATFWFTPLFTISVGLFLILLDKSNP 147


>At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 349

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 387 KERNRETGILLSRQDKNTAEISTIVSXTYKHEYLQKLIXQWK 512
           +ER +  GIL+S+  K T+   ++       E+LQ+L+ +WK
Sbjct: 303 RERRQGLGILVSKFPKETSASYSLQEPDEVMEFLQRLV-EWK 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,498,540
Number of Sequences: 28952
Number of extensions: 186675
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)