Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J24
(930 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 50 5e-07
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 48 2e-06
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 44 2e-05
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.008
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.025
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.033
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.18
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 31 0.23
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.23
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.40
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 28 2.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 2.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.8
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 5.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 5.0
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 6.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 6.6
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 8.7
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 50.0 bits (114), Expect = 5e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2
Query: 227 KAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 328
KAA VDVEP W +FAKALEG ++++L+ NIGSG
Sbjct: 32 KAANVDVEPIWATIFAKALEGKDLKELLLNIGSG 65
Score = 32.7 bits (71), Expect = 0.076
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 133 VSKAELACVYSALILVDDDVAVTGEKISTIFQSGGCRCRAILARSVRQSL 282
+S +ELA YSALIL D+ + +T +K+ ++ ++ I A ++L
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 227 KAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 325
KAA VDVEP W +FAKALEG ++++L+ NIGS
Sbjct: 32 KAANVDVEPIWATIFAKALEGKDLKELLLNIGS 64
Score = 32.7 bits (71), Expect = 0.076
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 133 VSKAELACVYSALILVDDDVAVTGEKISTIFQSGGCRCRAILARSVRQSL 282
+S +ELA YSALIL D+ + +T +K+ ++ ++ I A ++L
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +2
Query: 227 KAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 325
KA V+VEP W +FAKALEG ++++L+ NIGS
Sbjct: 32 KAGNVEVEPIWATIFAKALEGKDLKELLLNIGS 64
Score = 34.7 bits (76), Expect = 0.019
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +1
Query: 133 VSKAELACVYSALILVDDDVAVTGEKISTIFQSGGCRCRAILARSVRQSL 282
+S +ELA Y+ALIL D+ + +T +K+ ++ ++G I A ++L
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKAL 50
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/46 (45%), Positives = 22/46 (47%)
Frame = -1
Query: 705 GWGPEXXQRGXLGXXWGXGFNPSGXRGXPXGGGXGGGXXGGGGGXG 568
G+G E G G G G P G G P GG GGG G GGG G
Sbjct: 212 GFGGEGHHHGGHG---GFGGGPGGFEGGP--GGFGGGPGGFGGGLG 252
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -1
Query: 678 GXLGXXWGXGFNPSGXRGXPXGGGXGGGXXGGG-GGXG 568
G G G G P G G G G G G GGG GG G
Sbjct: 232 GFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.3 bits (75), Expect = 0.025
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXP 679
P PPPPP PP P P P P P + P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 578 PPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXP 679
PP P P PPP P P P P P+ P
Sbjct: 1699 PPQMSAPTPPPPPMSVP-PPPSAPPMPAGPPSAP 1731
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/42 (28%), Positives = 14/42 (33%)
Frame = +2
Query: 557 HXXNPXPPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPL 682
H P P P P P P P + P PN P+
Sbjct: 1453 HAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPV 1494
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXP 637
P P PP PPP P P P
Sbjct: 1722 PMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.033
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPL 682
P PP P PP PP P P G P P+ P+
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = +2
Query: 575 PPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPLX*XSGPHPXXLTIAAQTXXFXXAQ 754
PPPPP PP PL P G P P P P + A
Sbjct: 337 PPPPP--PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Query: 755 IPPXGXPXL 781
IP P L
Sbjct: 395 IPGRSAPAL 403
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXPXGLXPXP 658
P PPPPP PP G L P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 575 PPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPLX*XSGP 700
PP PP P P P G P P L P P P + P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPP-LPPAAPAPPPAPAPAPAAP 487
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +2
Query: 566 NPXPPPPP--XXPPPXPPPXGXP 628
NP PPPPP PP PPP P
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 584 PPXXPPPXPPPXGXPLXPXGLXPXP 658
PP PPP PPP G P P P
Sbjct: 5 PPGNPPPPPPPPG--FEPPSQPPPP 27
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXP 637
P PPPP PP PP P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 575 PPPPPXXPPPXPPPXGXPLXPXG 643
PPPPP P PP P P G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 581 PPPXXPPPXPPPXGXPLXPXGLXPXP 658
PP PPP PPP P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2
Query: 545 YNKXHXXNPXPPPPPXXPPPXPPPXGXPLXPXGLXPXP 658
YN+ + P P P P PPP G P P P
Sbjct: 625 YNRQYSFQPRPATPSNPPRSLPPPSGQVNAPMSQTPNP 662
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 575 PPPPPXXPPPXPPPXGXPLXPXG-LXPXPQXXPNXPLX*XSGPHP 706
PPPPP P P P P+ P + P P P +GP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 569 PXPPPPP--XXPPPXPPPXGXPLXPXGLXPXPQXXP 670
P PPP P PPP PPP G + G P P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG--VAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Frame = +2
Query: 569 PXPPPPPXXPP--PXPPPXGXPLXPXG----LXPXPQXXP 670
P PPPPP P PPP P G P PQ P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -1
Query: 699 GPEXXQRGXLGXXWGXGFNPSGXRGXPXGGGXGGGXXGGGGGXG 568
G RG G G G RG GGG GG G GG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = -1
Query: 699 GPEXXQRGXLGXXWGXGFNPSGXRGXPXGGGXG--GGXXGGGGGXG 568
G + G G G G G RG GG G GG G GG G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = -1
Query: 678 GXLGXXWGXGFNPSGXRGXPXGG--GXGGGXXGGGGGXG 568
G G G G G RG GG G GG G GG G
Sbjct: 24 GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 642 PSGXRGXPXGGGXGGGXXGGGGG 574
P G R P G G GG GG GG
Sbjct: 127 PKGARNGPAGRGGRGGFRGGRGG 149
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = -1
Query: 678 GXLGXXWGXGFNPSGXRGXPXGGGXGGGXXGGGGGXGF 565
G G G G N G G GG GGG GG G GF
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRG-GF 182
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -1
Query: 699 GPEXXQRGXLGXXWGXGFNPSGXRGXPXGGGXGGGXXG--GGGGXGF 565
G RG G GF G RG GG GG G GG GF
Sbjct: 145 GGRGGSRGGFGGNSRGGFG-GGSRGGFGGGSRGGSRGGFRGGSRGGF 190
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = -1
Query: 696 PEXXQRGXLGXXWGXGFNPSGXRGXPXGG--GXGGGXXGGGGGXGF 565
P+ + G G GF G RG GG G G GGG GF
Sbjct: 127 PKGARNGPAGRGGRGGFR--GGRGGSRGGFGGNSRGGFGGGSRGGF 170
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 678 GXLGXXWGXGFNPSGXRGXPXGGGXGGGXXGGGGG 574
G G G G + G G GG GG G GGG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 578 PPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPL 682
PPP P P P P + P P P PL
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPL 631
P PPPPP P P PL
Sbjct: 3 PAPPPPPPAPAPAAAAPAPPL 23
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Frame = +2
Query: 578 PPPPXXPPPXP---PPXGXPLXPXGLXPXPQXXPN--XPLX*XSGPHPXXLTIAAQTXXF 742
PP P PP P PP P P P P+ P+ P P A T
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217
Query: 743 XXAQIPPXG 769
+ PP G
Sbjct: 218 PSSFAPPAG 226
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 648 FNPSGXRGXPXGGGXGGGXXGGGGGXGF 565
+ G G P G G G G GGG GF
Sbjct: 71 YGEEGLNGQPGGPGGGPGEGFPGGGFGF 98
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 2.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 566 NPXPPPPPXXP 598
+P PPPPP P
Sbjct: 904 HPTPPPPPPLP 914
Score = 22.6 bits (46), Expect(2) = 2.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 587 PXXPPPXPPP 616
P PPP PPP
Sbjct: 942 PAFPPPPPPP 951
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 566 NPXPPPPPXXPPPXPP 613
+P P PPP PP PP
Sbjct: 233 DPLPAPPPPPPPTLPP 248
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = +2
Query: 575 PPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPLX*XSGPHPXXLTIAAQTXXFXXAQ 754
PPPPP P P P P + P P P + HP +I +Q+ F Q
Sbjct: 356 PPPPPPMPAPIYNVPNVPTVPT-VSPNPFLQPTFSGTSQASAHP---SIHSQSATFNNTQ 411
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXP---XGLXPXPQXXPNXPL 682
P P P PP PPP P P G+ P P P+
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPL 682
P PPP PP P G P P P P+ L
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/69 (26%), Positives = 21/69 (30%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPLX*XSGPHPXXLTIAAQTXXFXX 748
P P P PPP P P P P P P P ++AA
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP-SVAAPPVPKPS 1108
Query: 749 AQIPPXGXP 775
+PP P
Sbjct: 1109 VAVPPVPAP 1117
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPLX*XSGPHPXXL-TIAAQTXXFX 745
P P P PP P P G P P P P+ SG P ++AA
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAP------PVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 746 XAQIPPXGXP 775
+ IPP P
Sbjct: 1175 SSGIPPVPKP 1184
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +2
Query: 575 PPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXP 679
P P P PP P P P P P P P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.0 bits (47), Expect(2) = 5.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 578 PPPPXXPPP 604
PPPP PPP
Sbjct: 306 PPPPPPPPP 314
Score = 21.8 bits (44), Expect(2) = 5.0
Identities = 8/21 (38%), Positives = 8/21 (38%)
Frame = +2
Query: 596 PPPXPPPXGXPLXPXGLXPXP 658
PPP PPP P P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/49 (28%), Positives = 17/49 (34%)
Frame = +2
Query: 536 RLYYNKXHXXNPXPPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPL 682
RL + P PPPP PP P+ PQ P P+
Sbjct: 195 RLLEDSAVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPV 243
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 100 LRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTIFQSGGCRC 246
+R +A ++++ A + +LV+D V + G+ STI + G C
Sbjct: 1212 VRNMASKCFAAITESNAAGSKALHLLVEDVVPLLGDASSTIHRQGAIEC 1260
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 569 PXPPPPPXXPPPXPPPXGXPLXPXGLXPXPQXXPNXPL 682
P PP P P P P G P P P PL
Sbjct: 120 PGEPPLPDEPVPEEPLPGEPPLPNEPVPETNCHKESPL 157
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 215 PPSFKAAAVDVEPYWPGLFAKALEGINV 298
PPS + AVD+ P + +K +EG V
Sbjct: 138 PPSSEGPAVDIPPSMADITSKVIEGDGV 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,637
Number of Sequences: 5004
Number of extensions: 44365
Number of successful extensions: 359
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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