Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_J24
         (930 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.74 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   5.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 575 PPPPPXXPPPXPPPXGXP 628
           PP P   PPP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.74
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 566 NPXPPPPPXXPPPXPP 613
           NP   PPP  PP  PP
Sbjct: 41  NPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 587 PXXPPPXPPPXGXPLXPXGLXP 652
           P  P   PPP G P  P    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 581 PPPXXPPPXPPPXGXP 628
           PP   PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 578 PPPPXXPPPXPPPXG 622
           PP P  PPP P   G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 569  PXPPPPP 589
            P PPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 596  PPPXPPP 616
            PPP PPP
Sbjct: 1356 PPPPPPP 1362


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 156 CLLCSHPGG**CCRNW*ENFHHLSKR 233
           C L   P    CCR+W   F   SKR
Sbjct: 389 CELHMQPRKKNCCRSWLSKFPTRSKR 414


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 156 CLLCSHPGG**CCRNW*ENFHHLSKR 233
           C L   P    CCR+W   F   SKR
Sbjct: 389 CELHMQPRKKNCCRSWLSKFPTRSKR 414


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 24  YYWNSLRFCSLFVRTQTCLFSLELRPTATCTFKT 125
           Y WNS R  ++    +   F L   PTA  +  T
Sbjct: 160 YKWNSARQVAIAEDMKLSQFDLVANPTANYSAST 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,640
Number of Sequences: 438
Number of extensions: 5569
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)