Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J23
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 35 0.087
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.35
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.35
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 30 2.5
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.5
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.5
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.5
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 3.3
Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 7.5
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 7.5
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 34.7 bits (76), Expect = 0.087
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +1
Query: 700 PPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPXPPPXPXXXXXXXXPXPXPXXXP 861
PPP P PP F P P PPP P P P P P
Sbjct: 33 PPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 798 PPXPXXXPXXPXPPPXXXPXXPP 866
PP P P P PPP P PP
Sbjct: 57 PPPPMCPPPPPPPPPPMCPPPPP 79
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 679 GGXGXFSPPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPXPPPXPXXXXXXXXPXPXPXXX 858
GG PPP P PP P P PP P P P P
Sbjct: 20 GGCCSMGPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCP----PPPPPPPPPMCP 75
Query: 859 PP 864
PP
Sbjct: 76 PP 77
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +1
Query: 700 PPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPX-PPPXPXXXXXXXXPXPXPXXXPPRG 870
PPP T P PPS F P PPP P P P P P G
Sbjct: 302 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/64 (26%), Positives = 18/64 (28%)
Frame = +1
Query: 673 GXGGXGXFSPPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPXPPPXPXXXXXXXXPXPXPX 852
G G PPP + P PP P P PPP P P
Sbjct: 309 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368
Query: 853 XXPP 864
PP
Sbjct: 369 SRPP 372
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +1
Query: 700 PPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPX-PPPXPXXXXXXXXPXPXPXXXPPRG 870
PPP T P PPS F P PPP P P P P P G
Sbjct: 312 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/64 (26%), Positives = 18/64 (28%)
Frame = +1
Query: 673 GXGGXGXFSPPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPXPPPXPXXXXXXXXPXPXPX 852
G G PPP + P PP P P PPP P P
Sbjct: 319 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378
Query: 853 XXPP 864
PP
Sbjct: 379 SRPP 382
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 866 RGGXXXGXGXGXXXXWXXXGXGGGXGXXXGXKKKEGG 756
RGG G G G W G GG G G GG
Sbjct: 57 RGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGG 93
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 868 RGGXXGXXXGGGXGXXGXXXGXGGXXG 788
RGG G GGG G G G GG G
Sbjct: 104 RGGGGGGRGGGGGGGGGRGGGGGGRGG 130
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 869 PRGGXXXGXGXGXXXXWXXXGXGGGXGXXXGXKKKEGG 756
P GG G G W G GGG G G ++++GG
Sbjct: 244 PGGGGQGGYGGDYGGGWGQQG-GGGQGGWGGPQQQQGG 280
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 869 PRGGXXXGXGXGXXXXWXXXGXGGGXGXXXGXKKKEGG 756
P GG G G W G GGG G G ++++GG
Sbjct: 206 PGGGGQGGYGGDYGGGWGQQG-GGGQGGWGGPQQQQGG 242
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 869 PRGGXXXGXGXGXXXXWXXXGXGGGXGXXXGXKKKEGG 756
P GG G G W G GGG G G ++++GG
Sbjct: 244 PGGGGQGGYGGDYGGGWGQQG-GGGQGGWGGPQQQQGG 280
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 868 RGGXXGXXXGGGXGXXGXXXGXGGXXG 788
RGG G GGG G G G GG G
Sbjct: 212 RGGSGGGGGGGGGGGYGSGGGWGGGGG 238
>Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical
protein C25G4.4 protein.
Length = 424
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 197 FAIGTVPAVFLRVDSYNRKHSDQCKSDRKFHDFYS 93
FA+G P V RV S R Q K D F+D S
Sbjct: 332 FALGIPPVVVHRVQSIERNAYQQRKHDEMFNDIQS 366
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 174 GGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPG 272
G PDG PGV +D + GVN DG+PG
Sbjct: 429 GERGPDG--TPGVPGEDGIDGEQGVNGQDGQPG 459
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Frame = +1
Query: 688 GXFSPPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPXPPP----XPXXXXXXXXPXPXPXX 855
G SPPP P PP P P PPP P P P P
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPP-----PTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 305
Query: 856 XPPRG 870
PP G
Sbjct: 306 SPPTG 310
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Frame = +1
Query: 688 GXFSPPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPXPPP----XPXXXXXXXXPXPXPXX 855
G SPPP P PP P P PPP P P P P
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPP-----PTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 326
Query: 856 XPPRG 870
PP G
Sbjct: 327 SPPTG 331
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Frame = +1
Query: 688 GXFSPPPXXTXTXPXXXXXXKKXPPSFFFXPXXXPXPPP----XPXXXXXXXXPXPXPXX 855
G SPPP P PP P P PPP P P P P
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPP-----PTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 311
Query: 856 XPPRG 870
PP G
Sbjct: 312 SPPTG 316
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 869 PRGGXXXGXGXGXXXXWXXXGXGGGXGXXXGXKKKEGG 756
P GG G G G GGG G G ++++GG
Sbjct: 206 PGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGG 243
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 869 PRGGXXXGXGXGXXXXWXXXGXGGGXGXXXGXKKKEGG 756
P GG G G G GGG G G ++++GG
Sbjct: 244 PGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGG 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,185,764
Number of Sequences: 27780
Number of extensions: 230630
Number of successful extensions: 1428
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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