Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_J22
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 4.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 6.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 6.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 6.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 6.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 6.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 6.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 6.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 6.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 6.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 6.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 6.0
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 26 6.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 6.0
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 26 8.0
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 555 LGGRTDSRTHKDSCQRRQN*PRHGRC 632
L G+T + H +SC R++ RHG C
Sbjct: 49 LDGKTLEKQHCESCSIREDSSRHGIC 74
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 464 TRSPEQRICSEAKWTTLTSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTP 619
+++ E+ + K+T + L R + +GR + ++ T R+LS +TK P
Sbjct: 154 SKNAEEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNP 205
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 496 SEVDNINFSAPKNAADIINRWADEQTQG-HIKTPVSEDKIDPATAVAMFN 642
+ + NINF AP+ +I++ +EQ +K SE +P VA+ N
Sbjct: 578 TSISNINFEAPRYKTNIVHSLNNEQKYVLEVKNGTSEK--NPTRIVALEN 625
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 418 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKNAADIINRWA 561
T+ ++Y S Y++ D S+ + R + N+NF A KN + WA
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA-KNYSS--KEWA 347
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 677 RNVPVPPGKKMTLN--IATAVAGSILSSLTGVFMCP 576
RN P+PPGK +N I + I+ + CP
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACP 451
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 55 VRPVSVAAQPVMDKLLLLVTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKE 216
VR + A + +V LV GT AF+M EF + + + ILKE
Sbjct: 262 VRFIESPAWKEFGPFMSVVILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKE 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,630,008
Number of Sequences: 5004
Number of extensions: 74800
Number of successful extensions: 199
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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